Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RNU6-155P-201ENST00000516347 100 ntBASIC2□□□□□ -2.09
PCDH9Q9HC56 RNU6-966P-201ENST00000516479 104 ntBASIC2□□□□□ -2.09
PCDH9Q9HC56 MIR3945-201ENST00000581853 98 ntBASIC2□□□□□ -2.09
PCDH9Q9HC56 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2□□□□□ -2.09
PCDH9Q9HC56 AL627230.6-201ENST00000611129 280 ntBASIC2□□□□□ -2.09
PCDH9Q9HC56 AL590240.4-201ENST00000616908 390 ntBASIC2□□□□□ -2.09
PCDH9Q9HC56 RN7SL853P-201ENST00000617250 223 ntBASIC2□□□□□ -2.09
PCDH9Q9HC56 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2□□□□□ -2.09
PCDH9Q9HC56 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.99□□□□□ -2.09
PCDH9Q9HC56 Y_RNA.99-201ENST00000363138 105 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 RNU6-324P-201ENST00000363957 106 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 Y_RNA.230-201ENST00000364348 109 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 Y_RNA.276-201ENST00000364732 109 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 Y_RNA.446-201ENST00000384178 104 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 Y_RNA.462-201ENST00000384268 102 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 Y_RNA.570-201ENST00000384750 101 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 AC245102.2-201ENST00000448956 180 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 AP005660.1-201ENST00000522972 293 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.99□□□□□ -2.09
PCDH9Q9HC56 MIR4529-201ENST00000578110 78 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.99□□□□□ -2.09
PCDH9Q9HC56 AC006380.1-201ENST00000603598 186 ntBASIC1.99□□□□□ -2.09
PCDH9Q9HC56 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
PCDH9Q9HC56 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.99□□□□□ -2.09
PCDH9Q9HC56 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
PCDH9Q9HC56 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
PCDH9Q9HC56 AL159152.1-201ENST00000635019 2587 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 Y_RNA.286-201ENST00000364813 102 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 SNORD63-201ENST00000384262 68 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 RNU6-102P-201ENST00000384485 104 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 RNU6-1235P-201ENST00000384559 107 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 RPL23AP36-201ENST00000413895 458 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.98□□□□□ -2.09
PCDH9Q9HC56 MTCYBP9-201ENST00000431021 303 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 AL357134.1-201ENST00000445848 426 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 RNU6-498P-201ENST00000459468 107 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 RNU6-221P-201ENST00000459541 99 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 SEPT14P8-201ENST00000508026 178 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.98□□□□□ -2.09
PCDH9Q9HC56 MTCO2P24-201ENST00000515611 426 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 AL096840.1-201ENST00000603287 93 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.98□□□□□ -2.09
PCDH9Q9HC56 ZNF355P-201ENST00000427301 3216 ntBASIC1.98□□□□□ -2.09
PCDH9Q9HC56 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
PCDH9Q9HC56 MIR410-201ENST00000362222 80 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 RNU6-1266P-201ENST00000362794 105 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 snoU2_19.2-201ENST00000363024 80 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 Y_RNA.376-201ENST00000365638 108 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 RNU6-196P-201ENST00000384315 107 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 RNU6-160P-201ENST00000384591 107 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
PCDH9Q9HC56 MIR1253-201ENST00000408273 105 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 RNA5SP489-201ENST00000410986 109 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 AC060773.1-201ENST00000421698 310 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 OOSP1P1-201ENST00000423265 274 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 BX510359.4-201ENST00000423750 193 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 RN7SL274P-201ENST00000492268 272 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 HMGB3P17-201ENST00000504195 649 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
PCDH9Q9HC56 RNU6-1041P-201ENST00000516254 102 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 AC025647.1-201ENST00000517879 253 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 MIR4423-201ENST00000580922 80 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 SNRPGP19-201ENST00000603826 189 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 AC022441.3-201ENST00000605737 136 ntBASIC1.97□□□□□ -2.09
PCDH9Q9HC56 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.97□□□□□ -2.09
PCDH9Q9HC56 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.97□□□□□ -2.09
PCDH9Q9HC56 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.97□□□□□ -2.09
PCDH9Q9HC56 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
PCDH9Q9HC56 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
PCDH9Q9HC56 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
PCDH9Q9HC56 RNU6-23P-201ENST00000363283 107 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 RNU6-1164P-201ENST00000364428 107 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 MIR1302-3-201ENST00000408128 138 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 MIR1302-6-201ENST00000408466 90 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 RNU2-54P-201ENST00000410299 190 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDH9Q9HC56 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.96□□□□□ -2.1
PCDH9Q9HC56 AC005042.3-201ENST00000453230 174 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 MRPS17P9-201ENST00000511924 393 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 RNU2-34P-201ENST00000516534 121 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 AC087441.2-201ENST00000529141 262 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDH9Q9HC56 SNORD113-5-201ENST00000607261 78 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDH9Q9HC56 MIR8062-201ENST00000621515 85 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 uc_338.20-201ENST00000621563 178 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 U6.115-201ENST00000636045 103 ntBASIC1.96□□□□□ -2.1
PCDH9Q9HC56 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
PCDH9Q9HC56 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
PCDH9Q9HC56 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
PCDH9Q9HC56 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
PCDH9Q9HC56 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.95□□□□□ -2.1
PCDH9Q9HC56 SNORD114-1-201ENST00000362705 72 ntBASIC1.95□□□□□ -2.1
PCDH9Q9HC56 Y_RNA.84-201ENST00000363011 104 ntBASIC1.95□□□□□ -2.1
PCDH9Q9HC56 Y_RNA.144-201ENST00000363521 113 ntBASIC1.95□□□□□ -2.1
PCDH9Q9HC56 RNA5SP493-201ENST00000364115 91 ntBASIC1.95□□□□□ -2.1
PCDH9Q9HC56 RNU6-1240P-201ENST00000365155 104 ntBASIC1.95□□□□□ -2.1
PCDH9Q9HC56 Y_RNA.396-201ENST00000383949 103 ntBASIC1.95□□□□□ -2.1
PCDH9Q9HC56 Y_RNA.461-201ENST00000384263 103 ntBASIC1.95□□□□□ -2.1
PCDH9Q9HC56 RNU11-3P-201ENST00000391111 133 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 160.3 ms