Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AP005660.1-201ENST00000522972 293 ntBASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
PCIF1Q9H4Z3 Y_RNA.262-201ENST00000364641 102 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 U8.9-201ENST00000365667 134 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 Y_RNA.555-201ENST00000384673 110 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-493P-201ENST00000391321 108 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 MTCO2P33-201ENST00000402100 465 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 MIR1262-201ENST00000408276 93 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 SRIP3-201ENST00000413200 219 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 HSPE1P13-201ENST00000451143 297 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 RPS20P10-201ENST00000451209 253 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 RNU7-120P-201ENST00000459334 63 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 RPS27AP9-201ENST00000477681 438 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 AC010409.1-201ENST00000487382 476 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 HMGB3P3-201ENST00000510526 400 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 RNA5SP20-201ENST00000515976 84 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 AC022559.1-201ENST00000520905 205 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 MIR4308-201ENST00000580634 81 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 MIR6817-201ENST00000615588 66 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 AC013791.1-201ENST00000616619 62 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 AL449363.1-201ENST00000617815 186 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 MIR6852-201ENST00000621699 66 ntBASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.75□□□□□ -1.97
PCIF1Q9H4Z3 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 AL356292.1-201ENST00000283110 373 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 SNORD56.5-201ENST00000364281 72 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 MIR27B-201ENST00000385129 97 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-918P-201ENST00000391219 106 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 MIR887-201ENST00000401258 79 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 AC060773.1-201ENST00000421698 310 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 CR769767.1-201ENST00000436337 346 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 AC104332.1-201ENST00000440471 797 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 RNU7-26P-201ENST00000458980 63 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 RNU7-141P-201ENST00000459304 62 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 AC100767.1-201ENST00000528178 123 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 AC006023.1-201ENST00000603944 259 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 AC004832.4-201ENST00000608952 331 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 AC006435.5-201ENST00000624486 112 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 AL136360.1-201ENST00000503377 1900 ntBASIC2.74□□□□□ -1.97
PCIF1Q9H4Z3 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 Y_RNA.99-201ENST00000363138 105 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 COX6CP10-201ENST00000416832 224 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 AC087441.2-201ENST00000529141 262 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 MIR5692C2-201ENST00000577959 77 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.15-201ENST00000611544 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.16-201ENST00000613119 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.12-201ENST00000613778 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.20-201ENST00000613956 192 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.9-201ENST00000615427 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.11-201ENST00000616345 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.2-201ENST00000616535 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.3-201ENST00000617785 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.19-201ENST00000618602 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 RNU2-1-201ENST00000618664 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.6-201ENST00000619225 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.5-201ENST00000619465 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 U2.10-201ENST00000620268 191 ntBASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.73□□□□□ -1.97
PCIF1Q9H4Z3 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-682P-201ENST00000363843 106 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 SNORD114-6-201ENST00000364393 72 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-1072P-201ENST00000384703 107 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-443P-201ENST00000384780 107 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 PCNPP3-201ENST00000393579 471 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 RPS27P22-201ENST00000478056 241 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 RNU6-63P-201ENST00000516690 95 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 MIR5092-201ENST00000583139 88 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
PCIF1Q9H4Z3 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-899P-201ENST00000363947 107 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 Y_RNA.270-201ENST00000364693 104 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-117P-201ENST00000365415 107 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-886P-201ENST00000384319 105 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 MIR518C-201ENST00000384822 101 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 AL355497.1-201ENST00000406262 551 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 UBE2DNL-203ENST00000474922 222 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms