Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 RNU6-1278P-201ENST00000516130 107 ntBASIC0.22□□□□□ -2.37
VCX3BQ9H321 RNA5SP102-201ENST00000516865 106 ntBASIC0.22□□□□□ -2.37
VCX3BQ9H321 AL358944.1-201ENST00000528537 144 ntBASIC0.22□□□□□ -2.37
VCX3BQ9H321 AC010999.1-201ENST00000611856 324 ntBASIC0.22□□□□□ -2.37
VCX3BQ9H321 AL136317.1-201ENST00000612653 226 ntBASIC0.22□□□□□ -2.37
VCX3BQ9H321 AC097520.1-201ENST00000624435 385 ntBASIC0.22□□□□□ -2.37
VCX3BQ9H321 AC027279.3-201ENST00000625055 122 ntBASIC0.22□□□□□ -2.37
VCX3BQ9H321 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.22□□□□□ -2.37
VCX3BQ9H321 SNORA27.1-201ENST00000362604 124 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 RNA5SP48-201ENST00000363969 126 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 SNORA36.2-201ENST00000384004 127 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 MIR520G-201ENST00000385064 90 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 RNU4-55P-201ENST00000410731 137 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 RNA5SP222-201ENST00000411039 105 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.21□□□□□ -2.38
VCX3BQ9H321 MTND3P16-201ENST00000452205 344 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 PCMTD1P1-201ENST00000455560 355 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 RPS3AP17-201ENST00000472594 777 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 Y_RNA.683-201ENST00000516508 93 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 RNU6-107P-201ENST00000516643 102 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.21□□□□□ -2.38
VCX3BQ9H321 AC134698.4-201ENST00000523451 826 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 AC036111.3-201ENST00000526389 112 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.21□□□□□ -2.38
VCX3BQ9H321 POLR3GP2-201ENST00000588366 668 ntBASIC0.21□□□□□ -2.38
VCX3BQ9H321 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.2□□□□□ -2.38
VCX3BQ9H321 MIRLET7D-201ENST00000362263 87 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 RNU1-93P-201ENST00000364704 169 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 Y_RNA.296-201ENST00000364930 108 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 RNU6-117P-201ENST00000365415 107 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 SNORA69-201ENST00000383895 132 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 SNORA75-201ENST00000384158 137 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 MIR140-201ENST00000385282 100 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 RNU6-648P-201ENST00000410190 107 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 RNU6-994P-201ENST00000410507 111 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC0.2□□□□□ -2.38
VCX3BQ9H321 AL137792.2-201ENST00000443484 235 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 AC083904.1-201ENST00000487828 231 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 RNU6-1096P-201ENST00000517089 102 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.2□□□□□ -2.38
VCX3BQ9H321 AF235103.2-201ENST00000525753 346 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.2□□□□□ -2.38
VCX3BQ9H321 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.2□□□□□ -2.38
VCX3BQ9H321 MIR3684-201ENST00000579779 74 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 MIR4714-201ENST00000580728 77 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 AC087752.4-201ENST00000605911 462 ntBASIC0.2□□□□□ -2.38
VCX3BQ9H321 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
VCX3BQ9H321 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
VCX3BQ9H321 RNU6-1322P-201ENST00000364309 107 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 Y_RNA.231-201ENST00000364358 102 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 RNU6-654P-201ENST00000364373 107 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 RNU6-1264P-201ENST00000383891 107 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 RNU6-95P-201ENST00000384697 107 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 MIR517A-201ENST00000385001 87 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 SNORD105-201ENST00000386910 85 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 MIR1827-201ENST00000408549 66 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 RNU6-321P-201ENST00000410912 106 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.19□□□□□ -2.38
VCX3BQ9H321 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC0.19□□□□□ -2.38
VCX3BQ9H321 AC243428.1-201ENST00000421099 264 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 AL590632.1-201ENST00000424289 371 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.19□□□□□ -2.38
VCX3BQ9H321 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.19□□□□□ -2.38
VCX3BQ9H321 AC046134.1-201ENST00000514454 666 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 SNORA74.3-201ENST00000517108 154 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 MIR4498-201ENST00000577599 66 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 AC099654.12-201ENST00000639868 649 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.19□□□□□ -2.38
VCX3BQ9H321 AC073544.1-201ENST00000600110 1595 ntBASIC0.19□□□□□ -2.38
VCX3BQ9H321 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.18□□□□□ -2.38
VCX3BQ9H321 MIR337-201ENST00000362281 93 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 MIR96-201ENST00000362288 78 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 RNU6-349P-201ENST00000362402 107 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 RNU6-254P-201ENST00000363377 107 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 Y_RNA.372-201ENST00000365599 102 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 MIR520C-201ENST00000385005 87 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 MIR516B2-201ENST00000385190 85 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 MTCYBP4-201ENST00000401524 249 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 SNORD111-201ENST00000408139 94 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 RNU6-177P-201ENST00000411257 104 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.18□□□□□ -2.38
VCX3BQ9H321 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.18□□□□□ -2.38
VCX3BQ9H321 RPS20P10-201ENST00000451209 253 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 PCNPP5-201ENST00000452246 481 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 MTND1P11-201ENST00000456661 876 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC0.18□□□□□ -2.38
VCX3BQ9H321 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.18□□□□□ -2.38
VCX3BQ9H321 AC114811.1-201ENST00000507207 168 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 ACA59.1-201ENST00000515966 143 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 RNU6-1114P-201ENST00000516022 107 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 Y_RNA.695-201ENST00000516715 107 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 RNU6-835P-201ENST00000516974 104 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.18□□□□□ -2.38
VCX3BQ9H321 AC090625.1-201ENST00000357130 210 ntBASIC0.17□□□□□ -2.38
VCX3BQ9H321 RNU6-222P-201ENST00000362438 107 ntBASIC0.17□□□□□ -2.38
VCX3BQ9H321 U8.5-201ENST00000364528 136 ntBASIC0.17□□□□□ -2.38
VCX3BQ9H321 SNORD14.1-201ENST00000365609 90 ntBASIC0.17□□□□□ -2.38
VCX3BQ9H321 RNU6-342P-201ENST00000384521 104 ntBASIC0.17□□□□□ -2.38
VCX3BQ9H321 MIR15B-201ENST00000385045 98 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms