Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 MIR628-201ENST00000385229 95 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 MIR1302-3-201ENST00000408128 138 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 MCFD2P1-201ENST00000417812 300 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 MRPS18CP6-201ENST00000423587 223 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 AC073910.1-201ENST00000445047 438 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 SNORD65B-201ENST00000459126 73 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 snoU13.26-201ENST00000459452 105 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 AC010655.3-201ENST00000478818 450 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 AL163195.1-201ENST00000496941 348 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 MTCO2P24-201ENST00000515611 426 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 SNORA40.9-201ENST00000515895 93 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 RNU6-699P-201ENST00000517081 110 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 RNA5SP437-201ENST00000517249 129 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 AC027419.1-201ENST00000522976 328 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 MIR3684-201ENST00000579779 74 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 AC104695.3-201ENST00000604052 296 ntBASIC2.09□□□□□ -2.07
HERPUD2Q9BSE4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.09□□□□□ -2.08
HERPUD2Q9BSE4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.09□□□□□ -2.08
HERPUD2Q9BSE4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.08
HERPUD2Q9BSE4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.153-201ENST00000363615 91 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-1318P-201ENST00000365389 103 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-639P-201ENST00000384074 107 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.428-201ENST00000384078 102 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-439P-201ENST00000384188 106 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.452-201ENST00000384202 108 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 RNY1P14-201ENST00000384426 108 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 snoU13.15-201ENST00000459407 104 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 HMGB3P17-201ENST00000504195 649 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 AC010598.1-201ENST00000510378 103 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-794P-201ENST00000517261 64 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 RN7SKP295-201ENST00000517264 153 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 MIR3198-2-201ENST00000577868 80 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 MIR3149-201ENST00000584629 83 ntBASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.08□□□□□ -2.08
HERPUD2Q9BSE4 SNORD114-1-201ENST00000362705 72 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.158-201ENST00000363651 101 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 RNY3P11-201ENST00000364153 102 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-1310P-201ENST00000384153 107 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-196P-201ENST00000384315 107 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.527-201ENST00000384573 102 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 COX6CP10-201ENST00000416832 224 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 HMGN2P23-201ENST00000456759 269 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 RPS27P22-201ENST00000478056 241 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 AC008834.1-201ENST00000511612 175 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 RNU1-40P-201ENST00000516816 164 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 RNU1-97P-201ENST00000516872 164 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 AC090425.1-201ENST00000610007 140 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 U6.73-201ENST00000619194 103 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 AC006435.5-201ENST00000624486 112 ntBASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.47-201ENST00000362697 108 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 MRPL42P3-201ENST00000401492 326 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 MIR1267-201ENST00000408723 78 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 RAB28P5-201ENST00000427490 651 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 AL731563.1-201ENST00000442202 214 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 U8.20-201ENST00000459445 131 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 UBL5P3-201ENST00000475112 231 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 AC010469.2-201ENST00000496412 480 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 SNORD116.3-201ENST00000517176 78 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 AC124312.5-201ENST00000604451 268 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 U2.1-201ENST00000618978 145 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 MIR3674-201ENST00000636576 68 ntBASIC2.06□□□□□ -2.08
HERPUD2Q9BSE4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 ZNF355P-201ENST00000427301 3216 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.80-201ENST00000362996 102 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.252-201ENST00000364556 101 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.485-201ENST00000384395 102 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 Y_RNA.512-201ENST00000384518 102 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 MT-TG-201ENST00000387429 68 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 AL079342.1-201ENST00000401460 267 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 CHEK2P4-201ENST00000450340 246 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 snoU13.27-201ENST00000459278 104 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-408P-201ENST00000515910 100 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 AL442163.3-201ENST00000554110 156 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 AC110588.1-201ENST00000559699 137 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 MIR4438-201ENST00000585271 93 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 AC104984.5-201ENST00000586878 94 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 AL442067.1-201ENST00000613261 223 ntBASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
HERPUD2Q9BSE4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 SNORA63.7-201ENST00000365579 123 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 RNU6-926P-201ENST00000384075 107 ntBASIC2.04□□□□□ -2.08
HERPUD2Q9BSE4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 189.3 ms