Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL355796.1-201ENST00000406706 323 ntBASIC1.09□□□□□ -2.23
VPS35Q96QK1 MIR548F5-201ENST00000408421 86 ntBASIC1.09□□□□□ -2.23
VPS35Q96QK1 MIR1277-201ENST00000408536 78 ntBASIC1.09□□□□□ -2.23
VPS35Q96QK1 RPL37P10-201ENST00000412884 288 ntBASIC1.09□□□□□ -2.23
VPS35Q96QK1 RNU6-922P-201ENST00000516753 99 ntBASIC1.09□□□□□ -2.23
VPS35Q96QK1 CYCSP23-201ENST00000519781 313 ntBASIC1.09□□□□□ -2.23
VPS35Q96QK1 MIR4778-201ENST00000577635 80 ntBASIC1.09□□□□□ -2.23
VPS35Q96QK1 AL357075.2-201ENST00000614906 189 ntBASIC1.09□□□□□ -2.23
VPS35Q96QK1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.08□□□□□ -2.24
VPS35Q96QK1 Y_RNA.2-201ENST00000362330 96 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 RNU6-593P-201ENST00000364716 112 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 Y_RNA.594-201ENST00000410373 140 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 ELOCP21-201ENST00000412558 336 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 AC074085.1-201ENST00000413598 418 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 RPS3AP52-201ENST00000435639 297 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 DYNLT3P2-201ENST00000442517 295 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 RNU7-87P-201ENST00000459343 62 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 AC105029.1-201ENST00000520250 669 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS35Q96QK1 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS35Q96QK1 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS35Q96QK1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS35Q96QK1 AC091895.1-201ENST00000624494 256 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
VPS35Q96QK1 AC073544.1-201ENST00000600110 1595 ntBASIC1.08□□□□□ -2.24
VPS35Q96QK1 RNU6-874P-201ENST00000362390 105 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RNA5SP361-201ENST00000362686 118 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RNY1P16-201ENST00000363063 111 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 Y_RNA.265-201ENST00000364677 108 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RNU6-407P-201ENST00000365280 104 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 SNORA25-201ENST00000384384 134 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RNU11-5P-201ENST00000391216 129 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 MIR548K-201ENST00000408406 116 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RNU6-1050P-201ENST00000410388 107 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 AC018865.2-201ENST00000423631 129 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 MTCYBP10-201ENST00000424905 650 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 AL353997.1-201ENST00000432936 108 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.07□□□□□ -2.24
VPS35Q96QK1 OR2A41P-201ENST00000473586 105 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 AC087343.1-201ENST00000477341 475 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 Y_RNA.670-201ENST00000516255 105 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RNU2-56P-201ENST00000516826 190 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RNA5SP404-201ENST00000517118 132 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RPL21P9-201ENST00000556149 474 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 MIR3684-201ENST00000579779 74 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 MIR4295-201ENST00000585286 85 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 AL513534.2-201ENST00000603836 250 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 AL022345.2-201ENST00000606307 135 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 BX284668.6-201ENST00000606899 438 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 AC104260.1-201ENST00000616660 539 ntBASIC1.07□□□□□ -2.24
VPS35Q96QK1 RNU6-199P-201ENST00000362954 107 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 RNU6-879P-201ENST00000364328 108 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 RNU6-1145P-201ENST00000384246 107 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
VPS35Q96QK1 MTCYBP4-201ENST00000401524 249 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.06□□□□□ -2.24
VPS35Q96QK1 RAB28P5-201ENST00000427490 651 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 CALM2P4-201ENST00000430810 426 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 AC091021.1-201ENST00000468051 388 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.06□□□□□ -2.24
VPS35Q96QK1 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.06□□□□□ -2.24
VPS35Q96QK1 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.06□□□□□ -2.24
VPS35Q96QK1 AC027335.2-201ENST00000624030 375 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
VPS35Q96QK1 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.06□□□□□ -2.24
VPS35Q96QK1 MIR337-201ENST00000362281 93 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 Y_RNA.6-201ENST00000362350 114 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 SNORA27.1-201ENST00000362604 124 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 RNU6-424P-201ENST00000384367 105 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 RNU6-601P-201ENST00000384540 107 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 Y_RNA.557-201ENST00000384680 107 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 RNU6-376P-201ENST00000384731 106 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 MTND3P8-201ENST00000412909 339 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.05□□□□□ -2.24
VPS35Q96QK1 UBE2V1P7-201ENST00000446395 340 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 RPS29P28-201ENST00000446439 141 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 HMGN1P7-201ENST00000491722 313 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 AC011352.1-201ENST00000512300 793 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 AC074133.1-201ENST00000515696 183 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 RNA5SP20-201ENST00000515976 84 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 RNA5SP168-201ENST00000516642 112 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 Y_RNA.708-201ENST00000516950 96 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.05□□□□□ -2.24
VPS35Q96QK1 AC080078.3-201ENST00000605407 463 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 AC009229.3-201ENST00000608056 282 ntBASIC1.05□□□□□ -2.24
VPS35Q96QK1 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
VPS35Q96QK1 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
VPS35Q96QK1 Y_RNA.267-201ENST00000364679 109 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
VPS35Q96QK1 SNORA70.7-201ENST00000384159 133 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 MIR562-201ENST00000384894 95 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 MIR222-201ENST00000384992 110 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 U8.16-201ENST00000391279 133 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 MTND1P34-201ENST00000438556 671 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 AC107399.1-201ENST00000451226 265 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 U8.22-201ENST00000459141 133 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 COX6CP14-201ENST00000469580 174 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 AC105758.1-201ENST00000506038 399 ntBASIC1.04□□□□□ -2.24
VPS35Q96QK1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.04□□□□□ -2.24
VPS35Q96QK1 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms