Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SNORA12.1-201ENST00000390873 148 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 RAB28P5-201ENST00000427490 651 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 MTND3P23-201ENST00000431980 347 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 AC105758.1-201ENST00000506038 399 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 RNU2-56P-201ENST00000516826 190 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 AC100812.1-201ENST00000607622 580 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 GHRLOS.1-201ENST00000610995 70 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 MIR6079-201ENST00000635807 62 ntBASIC1.11□□□□□ -2.23
HDDC3Q8N4P3 RNU6-595P-201ENST00000363944 107 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.393-201ENST00000383936 102 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 MTCO2P7-201ENST00000446518 666 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 RNU6-322P-201ENST00000516010 103 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 RNU6-864P-201ENST00000516256 108 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 RNU7-172P-201ENST00000517125 64 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 AC093023.1-201ENST00000547375 507 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 AC100810.6-201ENST00000638068 285 ntBASIC1.1□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.9-201ENST00000362354 101 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 Y_RNA.41-201ENST00000362646 102 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 RNU1-124P-201ENST00000363861 145 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 MIR562-201ENST00000384894 95 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 RNU6-910P-201ENST00000390844 107 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 AL451046.2-201ENST00000403074 277 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 MTCO3P19-201ENST00000415864 321 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 MRPL35P3-201ENST00000421557 364 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 AL591704.2-201ENST00000421658 181 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 AC097462.1-201ENST00000514125 324 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 SNORD116-28-201ENST00000516123 91 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 RNU6-947P-201ENST00000516264 106 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 RNU6-1314P-201ENST00000517139 104 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 MIR5000-201ENST00000577717 103 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 AC211469.2-201ENST00000605461 205 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 AC012557.2-201ENST00000605919 418 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 AC015540.1-201ENST00000615828 501 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 AC012676.2-201ENST00000619258 186 ntBASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.09□□□□□ -2.23
HDDC3Q8N4P3 RNU6-222P-201ENST00000362438 107 ntBASIC1.08□□□□□ -2.24
HDDC3Q8N4P3 RNU1-139P-201ENST00000391307 165 ntBASIC1.08□□□□□ -2.24
HDDC3Q8N4P3 Z83846.1-201ENST00000446798 265 ntBASIC1.08□□□□□ -2.24
HDDC3Q8N4P3 UQCRBP2-201ENST00000447827 297 ntBASIC1.08□□□□□ -2.24
HDDC3Q8N4P3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.08□□□□□ -2.24
HDDC3Q8N4P3 AC093913.1-201ENST00000614178 329 ntBASIC1.08□□□□□ -2.24
HDDC3Q8N4P3 MIR6128-201ENST00000615528 109 ntBASIC1.08□□□□□ -2.24
HDDC3Q8N4P3 RNU4-79P-201ENST00000362764 141 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 RNU6-1059P-201ENST00000363752 98 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 RNU4-75P-201ENST00000364621 146 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 Y_RNA.267-201ENST00000364679 109 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 RNU6-407P-201ENST00000365280 104 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 RNU6-281P-201ENST00000384212 103 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 AL139396.1-201ENST00000421137 167 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 DLGAP5P1-201ENST00000430307 464 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 AC018710.1-201ENST00000506509 158 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 UBL5P1-201ENST00000507979 193 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 AC046134.1-201ENST00000514454 666 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 RNA5SP168-201ENST00000516642 112 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 AC090617.3-201ENST00000573670 475 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 AC136932.1-201ENST00000574771 208 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 MIR3684-201ENST00000579779 74 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 HSPE1P19-201ENST00000603327 295 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 MIR3662-201ENST00000637030 95 ntBASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
HDDC3Q8N4P3 Y_RNA.106-201ENST00000363189 100 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 RNU4-24P-201ENST00000364565 139 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 RNU6-1264P-201ENST00000383891 107 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 SNORA20B-201ENST00000384220 132 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 RNU6-376P-201ENST00000384731 106 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 Y_RNA.573-201ENST00000384763 105 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 MTCYBP4-201ENST00000401524 249 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 MIR1285-1-201ENST00000408593 84 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 USP9YP30-201ENST00000430729 455 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 CALM2P4-201ENST00000430810 426 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 RPL39P39-201ENST00000455840 151 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 AC048334.1-201ENST00000477975 159 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 RNU7-28P-201ENST00000516759 62 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 AC090049.2-201ENST00000550377 109 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 RN7SL793P-201ENST00000583259 296 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 SNORD114-21-201ENST00000606412 72 ntBASIC1.06□□□□□ -2.24
HDDC3Q8N4P3 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 Y_RNA.48-201ENST00000362710 103 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 RNY4P14-201ENST00000363656 96 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 RNU6-424P-201ENST00000384367 105 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 RNY1P4-201ENST00000384595 115 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 MIR216A-201ENST00000385063 110 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 RNU6-1001P-201ENST00000411265 100 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 AC091021.1-201ENST00000468051 388 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 RNU6-566P-201ENST00000516790 107 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 AL357312.1-201ENST00000603879 298 ntBASIC1.05□□□□□ -2.24
HDDC3Q8N4P3 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 AC073544.1-201ENST00000600110 1595 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 MTND5P16-201ENST00000460269 1703 ntBASIC1.04□□□□□ -2.24
HDDC3Q8N4P3 Y_RNA.157-201ENST00000363638 102 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms