Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 RNU6-1264P-201ENST00000383891 107 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 RNU6-424P-201ENST00000384367 105 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 MIR190B-201ENST00000401119 79 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 ELOCP21-201ENST00000412558 336 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 AL139396.1-201ENST00000421137 167 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 AC018865.2-201ENST00000423631 129 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 UQCRBP2-201ENST00000447827 297 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 MTND5P5-201ENST00000503764 376 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.682-201ENST00000516457 100 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 AL121579.1-201ENST00000555129 305 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 MIR5701-3-201ENST00000578890 82 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 MIR5701-1-201ENST00000585138 82 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 AC080078.2-201ENST00000603766 501 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 AC005014.2-201ENST00000607795 599 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 MIR5701-2-201ENST00000615634 82 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 AL133216.2-202ENST00000634512 349 ntBASIC0.91□□□□□ -2.26
NUDCD3Q8IVD9 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.26
NUDCD3Q8IVD9 RNU6-623P-201ENST00000363143 105 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 Y_RNA.267-201ENST00000364679 109 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-407P-201ENST00000365280 104 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 Y_RNA.453-201ENST00000384223 109 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 Y_RNA.516-201ENST00000384541 124 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 MIR653-201ENST00000385279 96 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-910P-201ENST00000390844 107 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 SNORD115-47-201ENST00000391226 86 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 AC093850.1-201ENST00000454121 251 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 COX6CP14-201ENST00000469580 174 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 OR9P1P-201ENST00000496431 281 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 TRMT112P2-201ENST00000512910 132 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 RNA5SP20-201ENST00000515976 84 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-917P-201ENST00000516294 104 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 RNU2-56P-201ENST00000516826 190 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 RPL21P9-201ENST00000556149 474 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 MIR4498-201ENST00000577599 66 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 AC018462.2-201ENST00000605375 395 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 MIR3688-2-201ENST00000636963 87 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 AC073544.1-201ENST00000600110 1595 ntBASIC0.9□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-874P-201ENST00000362390 105 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 SNORA1B-201ENST00000362535 133 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNA5SP361-201ENST00000362686 118 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNU4-79P-201ENST00000362764 141 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-53P-201ENST00000365367 106 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-1054P-201ENST00000411293 104 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNU7-87P-201ENST00000459343 62 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 AC026782.1-201ENST00000512952 449 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 SNORA31.4-201ENST00000516049 129 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-947P-201ENST00000516264 106 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RN7SKP49-201ENST00000516675 260 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-341P-201ENST00000516973 96 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 AC090049.2-201ENST00000550377 109 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 AC091178.2-201ENST00000584401 117 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 AC080078.3-201ENST00000605407 463 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 AC016727.1-205ENST00000605437 569 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 U4.5-201ENST00000617137 123 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 AC005592.1-201ENST00000566527 1640 ntBASIC0.89□□□□□ -2.27
NUDCD3Q8IVD9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 SNORA27.1-201ENST00000362604 124 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 Y_RNA.318-201ENST00000365131 97 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 Y_RNA.364-201ENST00000365532 101 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-1145P-201ENST00000384246 107 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-376P-201ENST00000384731 106 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 MTCYBP4-201ENST00000401524 249 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 AC092989.1-201ENST00000481235 277 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 AC005840.1-201ENST00000498412 377 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 AC105313.1-201ENST00000509121 353 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 AC136932.1-201ENST00000574771 208 ntBASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.88□□□□□ -2.27
NUDCD3Q8IVD9 Y_RNA.2-201ENST00000362330 96 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNA5SP432-201ENST00000362480 116 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-879P-201ENST00000364328 108 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-392P-201ENST00000364926 101 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 Y_RNA.557-201ENST00000384680 107 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-700P-201ENST00000391043 107 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNU11-5P-201ENST00000391216 129 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 AL451046.2-201ENST00000403074 277 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 Y_RNA.594-201ENST00000410373 140 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 AL603825.1-201ENST00000438481 80 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 AC245047.7-201ENST00000440265 293 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 U8.22-201ENST00000459141 133 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-329P-201ENST00000459618 107 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-1053P-201ENST00000515930 101 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-1291P-201ENST00000516591 104 ntBASIC0.87□□□□□ -2.27
NUDCD3Q8IVD9 RNU6-1016P-201ENST00000516689 94 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms