Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU7-172P-201ENST00000517125 64 ntBASIC-0.33□□□□□ -2.46
USP54Q70EL1 RNA5SP454-201ENST00000517231 127 ntBASIC-0.33□□□□□ -2.46
USP54Q70EL1 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.33□□□□□ -2.46
USP54Q70EL1 AC022616.3-201ENST00000523940 148 ntBASIC-0.33□□□□□ -2.46
USP54Q70EL1 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.33□□□□□ -2.46
USP54Q70EL1 AC009159.2-201ENST00000617603 606 ntBASIC-0.33□□□□□ -2.46
USP54Q70EL1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.34□□□□□ -2.46
USP54Q70EL1 RNU4-92P-201ENST00000363783 136 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 MIR1302-7-201ENST00000408841 72 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 RNU6-613P-201ENST00000410412 108 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-0.34□□□□□ -2.46
USP54Q70EL1 EPS15P1-201ENST00000448836 336 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 RNU4-49P-201ENST00000516080 140 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 SNORA18.7-201ENST00000516910 131 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 AL358944.1-201ENST00000528537 144 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 AC012433.1-201ENST00000588916 398 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 RNU6-85P-201ENST00000605989 107 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 AC002044.1-201ENST00000606707 158 ntBASIC-0.34□□□□□ -2.46
USP54Q70EL1 Y_RNA.18-201ENST00000362461 102 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 RNU6-369P-201ENST00000362515 102 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 RNU6-1303P-201ENST00000364841 107 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 RNU6-533P-201ENST00000384144 107 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 MTND1P4-201ENST00000435196 415 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.35□□□□□ -2.47
USP54Q70EL1 MTND1P26-201ENST00000440488 538 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 AC079781.2-201ENST00000446424 169 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 U8.21-201ENST00000459536 136 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 AC091951.3-201ENST00000504093 246 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 AC016550.1-201ENST00000505348 785 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 AC010598.1-201ENST00000510378 103 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 MTND1P8-201ENST00000571424 950 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 MIR8076-201ENST00000611401 83 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 AC104260.1-201ENST00000616660 539 ntBASIC-0.35□□□□□ -2.47
USP54Q70EL1 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.35□□□□□ -2.47
USP54Q70EL1 RNU6-137P-201ENST00000363680 108 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 RNU4-9P-201ENST00000364951 139 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 RNU6-1200P-201ENST00000384162 107 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC-0.36□□□□□ -2.47
USP54Q70EL1 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 MTCO3P19-201ENST00000415864 321 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 AL512286.1-201ENST00000439244 400 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC-0.36□□□□□ -2.47
USP54Q70EL1 USP9YP25-201ENST00000457708 443 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-0.36□□□□□ -2.47
USP54Q70EL1 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.36□□□□□ -2.47
USP54Q70EL1 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-0.36□□□□□ -2.47
USP54Q70EL1 RNU1-117P-201ENST00000517041 158 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 MTND2P32-201ENST00000521584 1038 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.36□□□□□ -2.47
USP54Q70EL1 SNORA25.18-201ENST00000607153 114 ntBASIC-0.36□□□□□ -2.47
USP54Q70EL1 RNU6-1127P-201ENST00000384580 107 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 MIR452-201ENST00000385020 85 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 MIR454-201ENST00000390180 115 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 MIR938-201ENST00000401216 83 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 MTND4P19-201ENST00000446659 478 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 snoU13.21-201ENST00000459368 105 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 GMFBP1-201ENST00000467831 427 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AC107401.1-201ENST00000503426 685 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 RNU2-69P-201ENST00000516061 100 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 Vault.3-201ENST00000516676 95 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AL355375.2-201ENST00000574825 175 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 MIR4999-201ENST00000585029 91 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 RBM11P1-201ENST00000604951 799 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AC138749.5-201ENST00000611461 208 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AC139792.3-201ENST00000623525 224 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 SNORA18.1-201ENST00000363418 128 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AC117470.1-201ENST00000381974 330 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 MT-TN-201ENST00000387400 73 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 RNU4-46P-201ENST00000410818 138 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AC243428.1-201ENST00000421099 264 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-0.37□□□□□ -2.47
USP54Q70EL1 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-0.37□□□□□ -2.47
USP54Q70EL1 MTND4P18-201ENST00000447010 465 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 snoU13.11-201ENST00000459219 104 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 RNA5SP20-201ENST00000515976 84 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 RNU6-612P-201ENST00000516909 102 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 RNA5SP94-201ENST00000516917 108 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-0.37□□□□□ -2.47
USP54Q70EL1 RMST_3.1-201ENST00000611651 109 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 AL008636.1-201ENST00000625038 1018 ntBASIC-0.37□□□□□ -2.47
USP54Q70EL1 RNU6-931P-201ENST00000363850 107 ntBASIC-0.38□□□□□ -2.47
USP54Q70EL1 RNU6-108P-201ENST00000365558 107 ntBASIC-0.38□□□□□ -2.47
USP54Q70EL1 SNORA8.2-201ENST00000384372 139 ntBASIC-0.38□□□□□ -2.47
USP54Q70EL1 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC-0.38□□□□□ -2.47
USP54Q70EL1 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.38□□□□□ -2.47
USP54Q70EL1 snoU109.3-201ENST00000459477 145 ntBASIC-0.38□□□□□ -2.47
USP54Q70EL1 AC105417.1-201ENST00000514691 285 ntBASIC-0.38□□□□□ -2.47
USP54Q70EL1 MIR548AO-201ENST00000579992 96 ntBASIC-0.38□□□□□ -2.47
USP54Q70EL1 SNORD114-5-201ENST00000362928 70 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 SNORD68-201ENST00000363214 84 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 RNU6-266P-201ENST00000364225 107 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 RNU6-1317P-201ENST00000364582 104 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 SNORD87-201ENST00000364849 89 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 RNA5SP117-201ENST00000365294 118 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 RNU6-1000P-201ENST00000391066 106 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 MTCYBP4-201ENST00000401524 249 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 SNORD100-201ENST00000408573 76 ntBASIC-0.39□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms