Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 SNORA27.1-201ENST00000362604 124 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 Y_RNA.60-201ENST00000362831 98 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 RNU4-80P-201ENST00000363200 141 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 Y_RNA.275-201ENST00000364726 110 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 Y_RNA.552-201ENST00000384665 112 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 MIR29C-201ENST00000385231 88 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 SNORA40.19-201ENST00000390846 128 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 AC108059.2-201ENST00000434626 151 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 AL121890.1-201ENST00000435457 205 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 HSPE1P13-201ENST00000451143 297 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 RNU6-1146P-201ENST00000516282 102 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 RNA5SP402-201ENST00000517148 110 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 MIR3126-201ENST00000577443 74 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 SNORD53-201ENST00000579969 78 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 MIR3945-201ENST00000581853 98 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 AL049779.4-201ENST00000604500 156 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 AL590808.1-201ENST00000618696 141 ntBASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
PTCHD3Q3KNS1 SNORA67.1-201ENST00000364749 141 ntBASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 Y_RNA.477-201ENST00000384352 108 ntBASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 AC010154.1-201ENST00000425857 269 ntBASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 RPL23AP7-203ENST00000449021 469 ntBASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 RPL21P9-201ENST00000556149 474 ntBASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 AC005357.1-201ENST00000588399 301 ntBASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 AC010900.2-201ENST00000604508 210 ntBASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.34□□□□□ -2.03
PTCHD3Q3KNS1 CENPCP1-201ENST00000533085 2578 ntBASIC2.34□□□□□ -2.04
PTCHD3Q3KNS1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.34□□□□□ -2.04
PTCHD3Q3KNS1 MIR21-201ENST00000362134 72 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.217-201ENST00000364214 105 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 RNY1-201ENST00000364228 113 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.277-201ENST00000364754 102 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.368-201ENST00000365547 113 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.539-201ENST00000384635 107 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 AC060773.1-201ENST00000421698 310 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.641-201ENST00000459414 105 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 RN7SL636P-201ENST00000497504 294 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 RNU4-71P-201ENST00000516258 113 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 RNA5SP24-201ENST00000516478 95 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 AC136628.3-201ENST00000521868 290 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 MIR3145-201ENST00000580727 82 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 MIR4658-201ENST00000584344 65 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 AL162424.1-201ENST00000602325 221 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 AC067747.1-201ENST00000608026 250 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 AL353149.1-201ENST00000610667 244 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 AC064859.1-201ENST00000624741 174 ntBASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
PTCHD3Q3KNS1 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.82-201ENST00000363000 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.92-201ENST00000363043 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 SNORD27-201ENST00000363981 72 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 SNORD114-6-201ENST00000364393 72 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.235-201ENST00000364412 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-1164P-201ENST00000364428 107 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.257-201ENST00000364596 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-740P-201ENST00000364734 105 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.306-201ENST00000365015 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.312-201ENST00000365089 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.322-201ENST00000365151 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-1318P-201ENST00000365389 103 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.456-201ENST00000384232 111 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 AC007064.1-201ENST00000412238 351 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.650-201ENST00000459002 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 AC234781.5-201ENST00000508429 271 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 AC026436.1-201ENST00000510537 270 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.777-201ENST00000516982 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-388P-201ENST00000517012 105 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 RNU6-389P-201ENST00000517048 105 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 MIR4282-201ENST00000583613 67 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.771-201ENST00000598668 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 AL078604.3-201ENST00000615580 211 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.789-201ENST00000622480 102 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 MIR1291-201ENST00000627649 87 ntBASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
PTCHD3Q3KNS1 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 Y_RNA.54-201ENST00000362766 105 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 RNU4-53P-201ENST00000410828 140 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 RPS26P55-201ENST00000471178 356 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 RPL36AP21-201ENST00000490372 323 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 AC011406.1-201ENST00000512440 370 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 RNA5SP20-201ENST00000515976 84 ntBASIC2.31□□□□□ -2.04
PTCHD3Q3KNS1 SNORA31.11-201ENST00000516528 139 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 180.7 ms