Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 USP9YP23-201ENST00000455085 407 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU7-185P-201ENST00000459215 60 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU7-138P-201ENST00000459479 64 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU6-221P-201ENST00000459541 99 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC091021.1-201ENST00000468051 388 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC008628.2-201ENST00000502605 298 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC091951.3-201ENST00000504093 246 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU7-41P-201ENST00000515917 61 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 RNU2-46P-201ENST00000517038 113 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 SNORA25.17-201ENST00000517184 124 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 MIR4778-201ENST00000577635 80 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 MIR544B-201ENST00000582372 78 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 MIR4438-201ENST00000585271 93 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC091135.1-201ENST00000585943 307 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 RMST_3.1-201ENST00000611651 109 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 TCL6_2.1-201ENST00000615162 119 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC105081.1-201ENST00000617727 106 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 AC138649.3-201ENST00000622154 254 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 MIR1246-201ENST00000636535 73 ntBASIC-0.08□□□□□ -2.42
COL7A1Q02388 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC-0.08□□□□□ -2.42
COL7A1Q02388 MIR1-1-201ENST00000362147 71 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU4-15P-201ENST00000362613 141 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU5B-2P-201ENST00000363036 113 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 SNORD45.3-201ENST00000363836 72 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-723P-201ENST00000383973 107 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-1029P-201ENST00000384109 107 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-975P-201ENST00000384296 105 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-906P-201ENST00000384700 70 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-417P-201ENST00000384712 107 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MIR570-201ENST00000384917 97 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MIR617-201ENST00000385030 97 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 MTCYBP2-201ENST00000407745 171 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNA5SP390-201ENST00000410191 113 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 ELOCP17-201ENST00000414751 326 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 C1DP2-201ENST00000418167 426 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC018865.2-201ENST00000423631 129 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MTCO1P20-201ENST00000425366 358 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 AL035398.1-201ENST00000430869 322 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 USP9YP29-201ENST00000445112 563 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AP000542.1-201ENST00000448473 371 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 C1DP4-201ENST00000455429 424 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU7-14P-201ENST00000459331 62 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC107297.1-201ENST00000459991 176 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC016632.1-201ENST00000503994 196 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC074133.1-201ENST00000515696 183 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RN7SKP19-201ENST00000516016 252 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU2-10P-201ENST00000516375 211 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 SNORA43.2-201ENST00000516652 128 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC133485.4-201ENST00000561835 220 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 PCMTD1P2-201ENST00000565017 355 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC090617.3-201ENST00000573670 475 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 MIR3925-201ENST00000584674 77 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 BNIP3P39-201ENST00000601077 554 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC246785.4-201ENST00000605374 287 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AL136370.1-201ENST00000608166 691 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC104260.1-201ENST00000616660 539 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AP002782.1-201ENST00000623107 614 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC-0.09□□□□□ -2.42
COL7A1Q02388 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 SNORA18.1-201ENST00000363418 128 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU5E-10P-201ENST00000363506 118 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-560P-201ENST00000364007 108 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU4-76P-201ENST00000364509 141 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 SNORD115-48-201ENST00000364764 76 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-784P-201ENST00000384330 106 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MT-TN-201ENST00000387400 73 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 SNORD28B-201ENST00000390993 75 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MIR892B-201ENST00000401279 77 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-613P-201ENST00000410412 108 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RNU6-387P-201ENST00000411331 105 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 MTCO1P17-201ENST00000411522 491 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC010975.2-201ENST00000427781 588 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC073415.1-201ENST00000449240 153 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 HSFY5P-201ENST00000453726 309 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 ZNF736P4Y-201ENST00000454995 1243 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 RPL39P36-201ENST00000490784 156 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC107401.1-201ENST00000503426 685 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC113410.1-201ENST00000505029 247 ntBASIC-0.09□□□□□ -2.42
COL7A1Q02388 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC-0.09□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms