Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RNU6-1310P-201ENST00000384153 107 ntBASIC1.19□□□□□ -2.22
LIM2P55344 RNA5SP109-201ENST00000391010 116 ntBASIC1.19□□□□□ -2.22
LIM2P55344 AC245047.3-201ENST00000429428 127 ntBASIC1.19□□□□□ -2.22
LIM2P55344 RPL23AP50-201ENST00000434149 455 ntBASIC1.19□□□□□ -2.22
LIM2P55344 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.19□□□□□ -2.22
LIM2P55344 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.19□□□□□ -2.22
LIM2P55344 AC099513.1-201ENST00000490423 301 ntBASIC1.19□□□□□ -2.22
LIM2P55344 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.19□□□□□ -2.22
LIM2P55344 RNU6-264P-201ENST00000517134 104 ntBASIC1.19□□□□□ -2.22
LIM2P55344 AC090821.2-201ENST00000523552 176 ntBASIC1.19□□□□□ -2.22
LIM2P55344 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.19□□□□□ -2.22
LIM2P55344 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.19□□□□□ -2.22
LIM2P55344 AC073544.1-201ENST00000600110 1595 ntBASIC1.19□□□□□ -2.22
LIM2P55344 AL390123.1-201ENST00000603216 237 ntBASIC1.19□□□□□ -2.22
LIM2P55344 AC016727.1-205ENST00000605437 569 ntBASIC1.19□□□□□ -2.22
LIM2P55344 AL353770.2-201ENST00000620024 78 ntBASIC1.19□□□□□ -2.22
LIM2P55344 MIR8054-201ENST00000620877 86 ntBASIC1.19□□□□□ -2.22
LIM2P55344 MIR8063-201ENST00000621930 81 ntBASIC1.19□□□□□ -2.22
LIM2P55344 AC095038.3-201ENST00000634439 195 ntBASIC1.19□□□□□ -2.22
LIM2P55344 Y_RNA.358-201ENST00000365491 99 ntBASIC1.18□□□□□ -2.22
LIM2P55344 RNU6-318P-201ENST00000384283 103 ntBASIC1.18□□□□□ -2.22
LIM2P55344 Y_RNA.474-201ENST00000384341 102 ntBASIC1.18□□□□□ -2.22
LIM2P55344 AL034345.1-201ENST00000407768 123 ntBASIC1.18□□□□□ -2.22
LIM2P55344 RNU6-1186P-201ENST00000410429 97 ntBASIC1.18□□□□□ -2.22
LIM2P55344 RNU6-370P-201ENST00000411008 104 ntBASIC1.18□□□□□ -2.22
LIM2P55344 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.18□□□□□ -2.22
LIM2P55344 AL603825.1-201ENST00000438481 80 ntBASIC1.18□□□□□ -2.22
LIM2P55344 RNU1-98P-201ENST00000458992 160 ntBASIC1.18□□□□□ -2.22
LIM2P55344 MIR2053-201ENST00000459295 91 ntBASIC1.18□□□□□ -2.22
LIM2P55344 RPS27P22-201ENST00000478056 241 ntBASIC1.18□□□□□ -2.22
LIM2P55344 AC097462.1-201ENST00000514125 324 ntBASIC1.18□□□□□ -2.22
LIM2P55344 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.18□□□□□ -2.22
LIM2P55344 AL442163.3-201ENST00000554110 156 ntBASIC1.18□□□□□ -2.22
LIM2P55344 SNORA28-201ENST00000606769 126 ntBASIC1.18□□□□□ -2.22
LIM2P55344 AL355073.2-201ENST00000612106 557 ntBASIC1.18□□□□□ -2.22
LIM2P55344 AL157834.3-201ENST00000615543 103 ntBASIC1.18□□□□□ -2.22
LIM2P55344 AL513423.1-201ENST00000621695 132 ntBASIC1.18□□□□□ -2.22
LIM2P55344 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
LIM2P55344 SNORA27.1-201ENST00000362604 124 ntBASIC1.17□□□□□ -2.22
LIM2P55344 RNA5SP361-201ENST00000362686 118 ntBASIC1.17□□□□□ -2.22
LIM2P55344 RNU1-22P-201ENST00000363334 158 ntBASIC1.17□□□□□ -2.22
LIM2P55344 SNORA20B-201ENST00000384220 132 ntBASIC1.17□□□□□ -2.22
LIM2P55344 Y_RNA.498-201ENST00000384460 102 ntBASIC1.17□□□□□ -2.22
LIM2P55344 MIR513A1-201ENST00000385138 129 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AC114482.1-201ENST00000418010 247 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.17□□□□□ -2.22
LIM2P55344 MTND4P28-201ENST00000426217 387 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AC015922.2-201ENST00000435593 184 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AL606517.2-201ENST00000442855 241 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.17□□□□□ -2.22
LIM2P55344 RNU6-625P-201ENST00000459412 107 ntBASIC1.17□□□□□ -2.22
LIM2P55344 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AC010469.2-201ENST00000496412 480 ntBASIC1.17□□□□□ -2.22
LIM2P55344 SNORA40.9-201ENST00000515895 93 ntBASIC1.17□□□□□ -2.22
LIM2P55344 SNORA31.10-201ENST00000516482 106 ntBASIC1.17□□□□□ -2.22
LIM2P55344 RNU6-911P-201ENST00000516523 104 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AC022868.1-201ENST00000517767 391 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AC144568.1-201ENST00000520139 137 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.17□□□□□ -2.22
LIM2P55344 AL929325.1-201ENST00000603096 117 ntBASIC1.17□□□□□ -2.22
LIM2P55344 snoU13.31-201ENST00000607291 104 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AC021506.2-201ENST00000612354 169 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AL357075.2-201ENST00000614906 189 ntBASIC1.17□□□□□ -2.22
LIM2P55344 MIR3674-201ENST00000636576 68 ntBASIC1.17□□□□□ -2.22
LIM2P55344 AL391987.6-201ENST00000305671 199 ntBASIC1.16□□□□□ -2.22
LIM2P55344 RNU6-1301P-201ENST00000362724 104 ntBASIC1.16□□□□□ -2.22
LIM2P55344 RNU6-310P-201ENST00000384655 107 ntBASIC1.16□□□□□ -2.22
LIM2P55344 RNU6-440P-201ENST00000390882 105 ntBASIC1.16□□□□□ -2.22
LIM2P55344 SNORA69.1-201ENST00000390904 137 ntBASIC1.16□□□□□ -2.22
LIM2P55344 MIR873-201ENST00000401120 77 ntBASIC1.16□□□□□ -2.22
LIM2P55344 MRPL35P1-201ENST00000404272 572 ntBASIC1.16□□□□□ -2.22
LIM2P55344 AL355796.1-201ENST00000406706 323 ntBASIC1.16□□□□□ -2.22
LIM2P55344 RNU4-14P-201ENST00000410858 122 ntBASIC1.16□□□□□ -2.22
LIM2P55344 Y_RNA.646-201ENST00000410980 101 ntBASIC1.16□□□□□ -2.22
LIM2P55344 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.16□□□□□ -2.22
LIM2P55344 SNX2P2-201ENST00000424553 323 ntBASIC1.16□□□□□ -2.22
LIM2P55344 Y_RNA.638-201ENST00000459374 113 ntBASIC1.16□□□□□ -2.22
LIM2P55344 RPL30P7-201ENST00000479312 323 ntBASIC1.16□□□□□ -2.22
LIM2P55344 RNU7-28P-201ENST00000516759 62 ntBASIC1.16□□□□□ -2.22
LIM2P55344 RPL21P9-201ENST00000556149 474 ntBASIC1.16□□□□□ -2.22
LIM2P55344 AC073413.2-201ENST00000604332 360 ntBASIC1.16□□□□□ -2.22
LIM2P55344 AP001485.1-201ENST00000604799 199 ntBASIC1.16□□□□□ -2.22
LIM2P55344 AC040896.1-201ENST00000613819 479 ntBASIC1.16□□□□□ -2.22
LIM2P55344 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
LIM2P55344 RNU6-99P-201ENST00000364721 107 ntBASIC1.15□□□□□ -2.23
LIM2P55344 Y_RNA.361-201ENST00000365515 120 ntBASIC1.15□□□□□ -2.23
LIM2P55344 SNORD26-201ENST00000384147 75 ntBASIC1.15□□□□□ -2.23
LIM2P55344 RNU6-1297P-201ENST00000384415 104 ntBASIC1.15□□□□□ -2.23
LIM2P55344 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.15□□□□□ -2.23
LIM2P55344 Y_RNA.592-201ENST00000410274 109 ntBASIC1.15□□□□□ -2.23
LIM2P55344 RNU6-955P-201ENST00000410497 104 ntBASIC1.15□□□□□ -2.23
LIM2P55344 RNA5SP475-201ENST00000410568 110 ntBASIC1.15□□□□□ -2.23
LIM2P55344 RPS27P16-201ENST00000425758 201 ntBASIC1.15□□□□□ -2.23
LIM2P55344 RAB28P5-201ENST00000427490 651 ntBASIC1.15□□□□□ -2.23
LIM2P55344 AC005002.2-201ENST00000438228 269 ntBASIC1.15□□□□□ -2.23
LIM2P55344 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.15□□□□□ -2.23
LIM2P55344 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.15□□□□□ -2.23
LIM2P55344 Y_RNA.653-201ENST00000459091 95 ntBASIC1.15□□□□□ -2.23
LIM2P55344 U8.22-201ENST00000459141 133 ntBASIC1.15□□□□□ -2.23
LIM2P55344 MTND4P17-201ENST00000470444 350 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms