Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 SNORA18.2-201ENST00000383865 132 ntBASIC2.32□□□□□ -2.04
TTC3P53804 SNORA67.3-201ENST00000384366 140 ntBASIC2.32□□□□□ -2.04
TTC3P53804 MT-TT-201ENST00000387460 66 ntBASIC2.32□□□□□ -2.04
TTC3P53804 RNU2-61P-201ENST00000411069 191 ntBASIC2.32□□□□□ -2.04
TTC3P53804 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.32□□□□□ -2.04
TTC3P53804 RPS27AP9-201ENST00000477681 438 ntBASIC2.32□□□□□ -2.04
TTC3P53804 MIR4423-201ENST00000580922 80 ntBASIC2.32□□□□□ -2.04
TTC3P53804 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.32□□□□□ -2.04
TTC3P53804 AC026241.1-201ENST00000517873 2142 ntBASIC2.32□□□□□ -2.04
TTC3P53804 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.32□□□□□ -2.04
TTC3P53804 Y_RNA.243-201ENST00000364481 109 ntBASIC2.31□□□□□ -2.04
TTC3P53804 Y_RNA.262-201ENST00000364641 102 ntBASIC2.31□□□□□ -2.04
TTC3P53804 SNORA14A-201ENST00000364773 135 ntBASIC2.31□□□□□ -2.04
TTC3P53804 SNORD87-201ENST00000364849 89 ntBASIC2.31□□□□□ -2.04
TTC3P53804 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.31□□□□□ -2.04
TTC3P53804 AC005840.1-201ENST00000498412 377 ntBASIC2.31□□□□□ -2.04
TTC3P53804 HSPE1P18-201ENST00000517602 280 ntBASIC2.31□□□□□ -2.04
TTC3P53804 AP002001.1-203ENST00000534002 267 ntBASIC2.31□□□□□ -2.04
TTC3P53804 AC069294.1-201ENST00000608397 350 ntBASIC2.31□□□□□ -2.04
TTC3P53804 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.31□□□□□ -2.04
TTC3P53804 U6.106-201ENST00000636360 105 ntBASIC2.31□□□□□ -2.04
TTC3P53804 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.31□□□□□ -2.04
TTC3P53804 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.3□□□□□ -2.04
TTC3P53804 Y_RNA.7-201ENST00000362352 102 ntBASIC2.3□□□□□ -2.04
TTC3P53804 RNU6-944P-201ENST00000364023 107 ntBASIC2.3□□□□□ -2.04
TTC3P53804 Y_RNA.238-201ENST00000364441 102 ntBASIC2.3□□□□□ -2.04
TTC3P53804 MIR147B-201ENST00000390185 80 ntBASIC2.3□□□□□ -2.04
TTC3P53804 AL357139.1-201ENST00000407792 426 ntBASIC2.3□□□□□ -2.04
TTC3P53804 RNU6-710P-201ENST00000410424 105 ntBASIC2.3□□□□□ -2.04
TTC3P53804 RNU4-61P-201ENST00000411243 107 ntBASIC2.3□□□□□ -2.04
TTC3P53804 AC027124.2-201ENST00000428249 105 ntBASIC2.3□□□□□ -2.04
TTC3P53804 RPL31P41-201ENST00000477967 372 ntBASIC2.3□□□□□ -2.04
TTC3P53804 RNU5F-4P-201ENST00000516581 114 ntBASIC2.3□□□□□ -2.04
TTC3P53804 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.3□□□□□ -2.04
TTC3P53804 snoU18.1-201ENST00000629629 71 ntBASIC2.3□□□□□ -2.04
TTC3P53804 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
TTC3P53804 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
TTC3P53804 Y_RNA.456-201ENST00000384232 111 ntBASIC2.3□□□□□ -2.04
TTC3P53804 RNA5SP344-201ENST00000411081 104 ntBASIC2.3□□□□□ -2.04
TTC3P53804 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.3□□□□□ -2.04
TTC3P53804 AC140059.1-201ENST00000489238 361 ntBASIC2.3□□□□□ -2.04
TTC3P53804 CKS1BP2-201ENST00000497342 240 ntBASIC2.3□□□□□ -2.04
TTC3P53804 RNU6-155P-201ENST00000516347 100 ntBASIC2.3□□□□□ -2.04
TTC3P53804 RNA5SP402-201ENST00000517148 110 ntBASIC2.3□□□□□ -2.04
TTC3P53804 CYCSP23-201ENST00000519781 313 ntBASIC2.3□□□□□ -2.04
TTC3P53804 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.3□□□□□ -2.04
TTC3P53804 AC004486.1-201ENST00000546846 233 ntBASIC2.3□□□□□ -2.04
TTC3P53804 MIR3144-201ENST00000579460 79 ntBASIC2.3□□□□□ -2.04
TTC3P53804 AC008739.2-201ENST00000597006 317 ntBASIC2.3□□□□□ -2.04
TTC3P53804 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
TTC3P53804 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
TTC3P53804 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
TTC3P53804 SNORD50.2-201ENST00000365465 70 ntBASIC2.29□□□□□ -2.04
TTC3P53804 AL133475.1-201ENST00000404414 305 ntBASIC2.29□□□□□ -2.04
TTC3P53804 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.29□□□□□ -2.04
TTC3P53804 AL445646.1-201ENST00000431784 216 ntBASIC2.29□□□□□ -2.04
TTC3P53804 RNA5SP458-201ENST00000516188 119 ntBASIC2.29□□□□□ -2.04
TTC3P53804 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.29□□□□□ -2.04
TTC3P53804 MIR4448-201ENST00000584360 86 ntBASIC2.29□□□□□ -2.04
TTC3P53804 U2.22-201ENST00000636441 106 ntBASIC2.29□□□□□ -2.04
TTC3P53804 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.29□□□□□ -2.04
TTC3P53804 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
TTC3P53804 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.29□□□□□ -2.04
TTC3P53804 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
TTC3P53804 RNU6-655P-201ENST00000362858 107 ntBASIC2.29□□□□□ -2.04
TTC3P53804 RNU4-80P-201ENST00000363200 141 ntBASIC2.29□□□□□ -2.04
TTC3P53804 RNU6-774P-201ENST00000363238 107 ntBASIC2.29□□□□□ -2.04
TTC3P53804 RNU6-1020P-201ENST00000363684 107 ntBASIC2.29□□□□□ -2.04
TTC3P53804 RNA5SP240-201ENST00000365355 128 ntBASIC2.29□□□□□ -2.04
TTC3P53804 MIR29B2-201ENST00000385055 81 ntBASIC2.29□□□□□ -2.04
TTC3P53804 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.29□□□□□ -2.04
TTC3P53804 AC097463.2-201ENST00000421074 142 ntBASIC2.29□□□□□ -2.04
TTC3P53804 AC091959.1-201ENST00000495857 238 ntBASIC2.29□□□□□ -2.04
TTC3P53804 SNORA70.12-201ENST00000516084 153 ntBASIC2.29□□□□□ -2.04
TTC3P53804 DEFB131C-201ENST00000528817 165 ntBASIC2.29□□□□□ -2.04
TTC3P53804 RNU6-1027P-201ENST00000383998 107 ntBASIC2.28□□□□□ -2.04
TTC3P53804 Y_RNA.498-201ENST00000384460 102 ntBASIC2.28□□□□□ -2.04
TTC3P53804 RNU6-159P-201ENST00000391080 106 ntBASIC2.28□□□□□ -2.04
TTC3P53804 AL031003.1-201ENST00000404229 172 ntBASIC2.28□□□□□ -2.04
TTC3P53804 MIR1283-1-201ENST00000408494 87 ntBASIC2.28□□□□□ -2.04
TTC3P53804 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.28□□□□□ -2.04
TTC3P53804 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.28□□□□□ -2.04
TTC3P53804 AL121594.1-201ENST00000475906 575 ntBASIC2.28□□□□□ -2.04
TTC3P53804 AC055872.1-201ENST00000570978 278 ntBASIC2.28□□□□□ -2.04
TTC3P53804 AC021753.1-201ENST00000635724 168 ntBASIC2.28□□□□□ -2.04
TTC3P53804 MIR7157-201ENST00000635801 60 ntBASIC2.28□□□□□ -2.04
TTC3P53804 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
TTC3P53804 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
TTC3P53804 ZNF355P-201ENST00000427301 3216 ntBASIC2.28□□□□□ -2.05
TTC3P53804 AL356292.1-201ENST00000283110 373 ntBASIC2.27□□□□□ -2.05
TTC3P53804 Y_RNA.435-201ENST00000384095 112 ntBASIC2.27□□□□□ -2.05
TTC3P53804 HMGN2P9-201ENST00000476875 229 ntBASIC2.27□□□□□ -2.05
TTC3P53804 RPS27P26-201ENST00000494583 239 ntBASIC2.27□□□□□ -2.05
TTC3P53804 RNU6-453P-201ENST00000516819 85 ntBASIC2.27□□□□□ -2.05
TTC3P53804 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.27□□□□□ -2.05
TTC3P53804 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
TTC3P53804 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
TTC3P53804 U3.9-201ENST00000363823 204 ntBASIC2.27□□□□□ -2.05
TTC3P53804 RNA5SP99-201ENST00000364020 114 ntBASIC2.27□□□□□ -2.05
TTC3P53804 RNU6-1083P-201ENST00000384022 107 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms