Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC011476.5-201ENST00000615594 130 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 uc_338.20-201ENST00000621563 178 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 AC091932.3-201ENST00000624223 323 ntBASIC2.03□□□□□ -2.08
SHMT1P34896 RNU6-1266P-201ENST00000362794 105 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 RNU6-626P-201ENST00000363354 107 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 RNU6-1240P-201ENST00000365155 104 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 Y_RNA.439-201ENST00000384119 94 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 Y_RNA.455-201ENST00000384230 98 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 MIR1283-2-201ENST00000408621 87 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 MIR1252-201ENST00000408861 65 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 AC060773.1-201ENST00000421698 310 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 RPEP5-201ENST00000441137 268 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.02□□□□□ -2.09
SHMT1P34896 Y_RNA.715-201ENST00000517082 110 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 RNU2-19P-201ENST00000517288 84 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 SUMO2P18-201ENST00000518873 252 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 AP005660.1-201ENST00000522972 293 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 AC005786.1-201ENST00000588553 154 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.02□□□□□ -2.09
SHMT1P34896 AC245060.5-201ENST00000610778 3293 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 AC008555.8-201ENST00000623602 2168 ntBASIC2.02□□□□□ -2.09
SHMT1P34896 RNU6-661P-201ENST00000362409 107 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 Y_RNA.230-201ENST00000364348 109 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 RNU6-450P-201ENST00000364654 107 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 SNORA72.2-201ENST00000365028 127 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 RNU6-20P-201ENST00000384106 107 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 Y_RNA.527-201ENST00000384573 102 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 RNA5SP489-201ENST00000410986 109 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 ATP5J2P3-201ENST00000451550 258 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 AC011406.1-201ENST00000512440 370 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 CBX3P4-201ENST00000538909 354 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 AC005176.2-201ENST00000596933 147 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 AC006001.4-201ENST00000622243 395 ntBASIC2.01□□□□□ -2.09
SHMT1P34896 Y_RNA.462-201ENST00000384268 102 ntBASIC2□□□□□ -2.09
SHMT1P34896 MIR1253-201ENST00000408273 105 ntBASIC2□□□□□ -2.09
SHMT1P34896 RNU6-985P-201ENST00000410182 104 ntBASIC2□□□□□ -2.09
SHMT1P34896 RNU5A-5P-201ENST00000411054 116 ntBASIC2□□□□□ -2.09
SHMT1P34896 AC055731.1-201ENST00000474387 401 ntBASIC2□□□□□ -2.09
SHMT1P34896 RNU6-764P-201ENST00000516396 105 ntBASIC2□□□□□ -2.09
SHMT1P34896 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2□□□□□ -2.09
SHMT1P34896 MIR4303-201ENST00000581299 66 ntBASIC2□□□□□ -2.09
SHMT1P34896 MIR3935-201ENST00000583472 104 ntBASIC2□□□□□ -2.09
SHMT1P34896 AL353149.1-201ENST00000610667 244 ntBASIC2□□□□□ -2.09
SHMT1P34896 AC004467.1-201ENST00000615678 330 ntBASIC2□□□□□ -2.09
SHMT1P34896 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2□□□□□ -2.09
SHMT1P34896 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
SHMT1P34896 Y_RNA.152-201ENST00000363578 100 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 SNORA16B-201ENST00000364674 135 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 MIR597-201ENST00000384968 97 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
SHMT1P34896 SUMO2P12-201ENST00000405924 140 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 RNA5SP450-201ENST00000411206 102 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 AL390729.2-201ENST00000416137 156 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 MTND2P29-201ENST00000438595 412 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 RNU6-1041P-201ENST00000516254 102 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 AP002001.1-203ENST00000534002 267 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 AC113195.1-201ENST00000579952 141 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 AC008749.1-201ENST00000597650 306 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 AL355297.3-201ENST00000604082 446 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 U1.36-201ENST00000620684 176 ntBASIC1.99□□□□□ -2.09
SHMT1P34896 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SHMT1P34896 SNORD48-201ENST00000364953 64 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 AC016909.1-201ENST00000415916 166 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.98□□□□□ -2.09
SHMT1P34896 AC005002.2-201ENST00000438228 269 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.98□□□□□ -2.09
SHMT1P34896 SUMO1P2-201ENST00000452524 304 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 AC010598.1-201ENST00000510378 103 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 RNU6-1137P-201ENST00000517073 99 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.98□□□□□ -2.09
SHMT1P34896 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.98□□□□□ -2.09
SHMT1P34896 AC006380.1-201ENST00000603598 186 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 MIR502-201ENST00000606349 86 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 AL021879.1-201ENST00000611756 288 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 AC006435.5-201ENST00000624486 112 ntBASIC1.98□□□□□ -2.09
SHMT1P34896 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SHMT1P34896 snoU2-30.2-201ENST00000362805 70 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 Y_RNA.183-201ENST00000363882 113 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 RNU6-454P-201ENST00000364292 107 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 SNORD63-201ENST00000384262 68 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 RNU6-1160P-201ENST00000384546 104 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 MIR606-201ENST00000384851 96 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 RNU4-62P-201ENST00000410125 130 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.97□□□□□ -2.09
SHMT1P34896 AC073910.1-201ENST00000445047 438 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.97□□□□□ -2.09
SHMT1P34896 SNORD65B-201ENST00000459126 73 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.97□□□□□ -2.09
SHMT1P34896 MIR4287-201ENST00000579398 78 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 AC022432.1-201ENST00000595739 310 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 AL627230.6-201ENST00000611129 280 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 PART1_1.1-201ENST00000611761 217 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 AC007742.2-201ENST00000618226 398 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 MIR338-201ENST00000636369 67 ntBASIC1.97□□□□□ -2.09
SHMT1P34896 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SHMT1P34896 Y_RNA.143-201ENST00000363520 106 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 Y_RNA.570-201ENST00000384750 101 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 RNU2-54P-201ENST00000410299 190 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms