Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 RNU5A-5P-201ENST00000411054 116 ntBASIC-0.47□□□□□ -2.48
SDC4P31431 BTF3P11-201ENST00000426582 477 ntBASIC-0.47□□□□□ -2.48
SDC4P31431 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC-0.47□□□□□ -2.48
SDC4P31431 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.47□□□□□ -2.48
SDC4P31431 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.47□□□□□ -2.48
SDC4P31431 AC090897.1-201ENST00000580909 226 ntBASIC-0.47□□□□□ -2.48
SDC4P31431 AC092447.9-201ENST00000603395 144 ntBASIC-0.47□□□□□ -2.48
SDC4P31431 AL670379.3-201ENST00000605040 251 ntBASIC-0.47□□□□□ -2.48
SDC4P31431 AC006435.5-201ENST00000624486 112 ntBASIC-0.47□□□□□ -2.48
SDC4P31431 RNU6-931P-201ENST00000363850 107 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 MIR760-201ENST00000390220 80 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 MTND1P26-201ENST00000440488 538 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 MTND4P18-201ENST00000447010 465 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 USP9YP25-201ENST00000457708 443 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 RPS29P15-201ENST00000458329 171 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 SNORD4A-201ENST00000459174 72 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 AL355375.2-201ENST00000574825 175 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 RNU4-5P-201ENST00000607255 135 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 MIR7107-201ENST00000611489 80 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 uc_338.6-201ENST00000613544 171 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 AC099654.13-201ENST00000639774 207 ntBASIC-0.48□□□□□ -2.49
SDC4P31431 RNU5F-6P-201ENST00000362979 116 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 AC117470.1-201ENST00000381974 330 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 SNORA20B-201ENST00000384220 132 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 RNU6-136P-201ENST00000384663 107 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 RNU6-376P-201ENST00000384731 106 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 PDCL2P1-201ENST00000419302 352 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.49□□□□□ -2.49
SDC4P31431 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC-0.49□□□□□ -2.49
SDC4P31431 SCARNA18-201ENST00000459004 134 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 RNU6-1037P-201ENST00000459571 107 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 AC091885.1-201ENST00000506658 268 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 AC010598.1-201ENST00000510378 103 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 RNU6-320P-201ENST00000516511 106 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 MTCO3P23-201ENST00000561363 289 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 MIR548AR-201ENST00000582191 57 ntBASIC-0.49□□□□□ -2.49
SDC4P31431 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-0.49□□□□□ -2.49
SDC4P31431 RNU6-396P-201ENST00000365369 105 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 Y_RNA.376-201ENST00000365638 108 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 RNU6-74P-201ENST00000384235 107 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 MTND4P32-201ENST00000437189 1237 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 RNU7-102P-201ENST00000458948 62 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 AC016550.1-201ENST00000505348 785 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 AC018710.1-201ENST00000506509 158 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 AC105185.1-201ENST00000518705 535 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 AC091144.1-201ENST00000519573 138 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 MTND1P35-201ENST00000526739 508 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC-0.5□□□□□ -2.49
SDC4P31431 AL158211.2-201ENST00000607282 395 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.5□□□□□ -2.49
SDC4P31431 MTND4P12-201ENST00000498999 1377 ntBASIC-0.5□□□□□ -2.49
SDC4P31431 RNY1P12-201ENST00000364251 105 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 RNU6-1317P-201ENST00000364582 104 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 SNORD114-12-201ENST00000365400 75 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 MIR454-201ENST00000390180 115 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 MIR938-201ENST00000401216 83 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 RNU2-54P-201ENST00000410299 190 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 AC018865.2-201ENST00000423631 129 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 RNU7-159P-201ENST00000459284 62 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 RPL17P19-201ENST00000489069 552 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.51□□□□□ -2.49
SDC4P31431 MTND4P9-201ENST00000507819 1346 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 Y_RNA.672-201ENST00000516289 104 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 SNORA25.14-201ENST00000516481 132 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 MTND2P38-201ENST00000522536 667 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 FGF7P1-201ENST00000582820 288 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 Z94722.1-201ENST00000604328 474 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 AL359999.1-201ENST00000604513 294 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 AC064836.2-201ENST00000609491 462 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 AC091304.9-201ENST00000612091 226 ntBASIC-0.51□□□□□ -2.49
SDC4P31431 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 RNU6-407P-201ENST00000365280 104 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 MIR15B-201ENST00000385045 98 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 MIR892B-201ENST00000401279 77 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.52□□□□□ -2.49
SDC4P31431 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-0.52□□□□□ -2.49
SDC4P31431 AC079354.2-201ENST00000453523 154 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 RNU7-165P-201ENST00000458864 60 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 AC091179.3-201ENST00000474761 144 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 RPL23AP75-201ENST00000491601 451 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-0.52□□□□□ -2.49
SDC4P31431 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-0.52□□□□□ -2.49
SDC4P31431 MIR5583-1-201ENST00000580941 59 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 AL591926.4-201ENST00000616895 298 ntBASIC-0.52□□□□□ -2.49
SDC4P31431 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC-0.52□□□□□ -2.49
SDC4P31431 RNA5SP257-201ENST00000363023 116 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 Y_RNA.280-201ENST00000364765 112 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 RNU6-125P-201ENST00000384505 107 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 RNU6-925P-201ENST00000384629 104 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 MIR106A-201ENST00000384870 81 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 MIR1-2-201ENST00000384961 85 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 SSR1P2-201ENST00000415208 787 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 MTCO2P21-201ENST00000419780 677 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.53□□□□□ -2.49
SDC4P31431 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.53□□□□□ -2.49
SDC4P31431 AL353572.1-201ENST00000442490 417 ntBASIC-0.53□□□□□ -2.49
SDC4P31431 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-0.53□□□□□ -2.49
SDC4P31431 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.53□□□□□ -2.49
SDC4P31431 RNA5SP20-201ENST00000515976 84 ntBASIC-0.53□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms