Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.85□□□□□ -2.27
HLA-DQA1P01909 Y_RNA.708-201ENST00000516950 96 ntBASIC0.85□□□□□ -2.27
HLA-DQA1P01909 RNU7-172P-201ENST00000517125 64 ntBASIC0.85□□□□□ -2.27
HLA-DQA1P01909 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.85□□□□□ -2.27
HLA-DQA1P01909 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.85□□□□□ -2.27
HLA-DQA1P01909 AC011712.1-201ENST00000588959 234 ntBASIC0.85□□□□□ -2.27
HLA-DQA1P01909 MIR6078-201ENST00000611069 100 ntBASIC0.85□□□□□ -2.27
HLA-DQA1P01909 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.85□□□□□ -2.27
HLA-DQA1P01909 AC073349.3-201ENST00000617616 186 ntBASIC0.85□□□□□ -2.27
HLA-DQA1P01909 AC006435.5-201ENST00000624486 112 ntBASIC0.85□□□□□ -2.27
HLA-DQA1P01909 MIR6079-201ENST00000635807 62 ntBASIC0.85□□□□□ -2.27
HLA-DQA1P01909 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC0.85□□□□□ -2.27
HLA-DQA1P01909 AC027514.1-201ENST00000588561 1603 ntBASIC0.85□□□□□ -2.27
HLA-DQA1P01909 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
HLA-DQA1P01909 AC073544.1-201ENST00000600110 1595 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNU6-454P-201ENST00000364292 107 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNU6-1264P-201ENST00000383891 107 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNU6-318P-201ENST00000384283 103 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 Y_RNA.482-201ENST00000384377 111 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNU6-505P-201ENST00000384427 107 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 Y_RNA.498-201ENST00000384460 102 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 SNORA40.6-201ENST00000391153 128 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 FCF1P9-201ENST00000412546 282 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RPL37P10-201ENST00000412884 288 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RPL23AP36-201ENST00000413895 458 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 MTCO3P19-201ENST00000415864 321 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.84□□□□□ -2.27
HLA-DQA1P01909 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC107399.1-201ENST00000451226 265 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNU7-94P-201ENST00000459576 63 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RPL39P38-201ENST00000467018 153 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AL163540.1-201ENST00000485382 386 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNA5SP20-201ENST00000515976 84 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 SCARNA16.2-201ENST00000516520 172 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNA5SP168-201ENST00000516642 112 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNU7-30P-201ENST00000516835 62 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 RNU6-1213P-201ENST00000517075 94 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC022868.1-201ENST00000517767 391 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC018448.1-201ENST00000552843 316 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC060780.3-201ENST00000589464 80 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AP000942.3-201ENST00000603702 160 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AC104260.1-201ENST00000616660 539 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AL353770.2-201ENST00000620024 78 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 AL513423.1-201ENST00000621695 132 ntBASIC0.84□□□□□ -2.27
HLA-DQA1P01909 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.83□□□□□ -2.28
HLA-DQA1P01909 AL391987.6-201ENST00000305671 199 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 RNU6-593P-201ENST00000364716 112 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 RNU6-407P-201ENST00000365280 104 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 MIR660-201ENST00000385235 97 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 SNORA75.4-201ENST00000391278 119 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 RNU4-14P-201ENST00000410858 122 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 AC092423.1-201ENST00000430165 186 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 CALM2P4-201ENST00000430810 426 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 AC093850.1-201ENST00000454121 251 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 AC091021.1-201ENST00000468051 388 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.83□□□□□ -2.28
HLA-DQA1P01909 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.83□□□□□ -2.28
HLA-DQA1P01909 RNU6-120P-201ENST00000516077 103 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 RNU6-922P-201ENST00000516753 99 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 CYCSP23-201ENST00000519781 313 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.83□□□□□ -2.28
HLA-DQA1P01909 AC091178.2-201ENST00000584401 117 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 MIR3660-201ENST00000584845 100 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 AL162424.1-201ENST00000602325 221 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 MIR1244-1-201ENST00000612829 85 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 MIR1244-3-201ENST00000635744 85 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 U6.115-201ENST00000636045 103 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 MIR1244-2-201ENST00000636449 85 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 AC099654.5-201ENST00000636479 350 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 MIR1244-4-202ENST00000636813 85 ntBASIC0.83□□□□□ -2.28
HLA-DQA1P01909 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
HLA-DQA1P01909 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 SNORA27.1-201ENST00000362604 124 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 Y_RNA.265-201ENST00000364677 108 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 Y_RNA.267-201ENST00000364679 109 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 SNORA25.8-201ENST00000364831 128 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.82□□□□□ -2.28
HLA-DQA1P01909 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
HLA-DQA1P01909 RNU6-136P-201ENST00000384663 107 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 U8.16-201ENST00000391279 133 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 MTCYBP4-201ENST00000401524 249 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 BTF3P4-201ENST00000418852 495 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.82□□□□□ -2.28
HLA-DQA1P01909 AC018865.2-201ENST00000423631 129 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.82□□□□□ -2.28
HLA-DQA1P01909 AC074133.1-201ENST00000515696 183 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 RN7SKP49-201ENST00000516675 260 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 RPL21P9-201ENST00000556149 474 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 AC092794.2-201ENST00000620933 563 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.82□□□□□ -2.28
HLA-DQA1P01909 AC005592.1-201ENST00000566527 1640 ntBASIC0.82□□□□□ -2.28
HLA-DQA1P01909 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
HLA-DQA1P01909 SNORA1B-201ENST00000362535 133 ntBASIC0.81□□□□□ -2.28
HLA-DQA1P01909 Y_RNA.72-201ENST00000362894 103 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms