Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.01□□□□□ -2.25
CLDN3O15551 MIR6857-201ENST00000613267 93 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CLDN3O15551 MTND5P16-201ENST00000460269 1703 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1□□□□□ -2.25
CLDN3O15551 Y_RNA.106-201ENST00000363189 100 ntBASIC1□□□□□ -2.25
CLDN3O15551 RNY4P14-201ENST00000363656 96 ntBASIC1□□□□□ -2.25
CLDN3O15551 U8.16-201ENST00000391279 133 ntBASIC1□□□□□ -2.25
CLDN3O15551 RNU1-139P-201ENST00000391307 165 ntBASIC1□□□□□ -2.25
CLDN3O15551 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1□□□□□ -2.25
CLDN3O15551 RNU6-1001P-201ENST00000411265 100 ntBASIC1□□□□□ -2.25
CLDN3O15551 UQCRBP2-201ENST00000447827 297 ntBASIC1□□□□□ -2.25
CLDN3O15551 AC091021.1-201ENST00000468051 388 ntBASIC1□□□□□ -2.25
CLDN3O15551 AC093534.1-201ENST00000504977 132 ntBASIC1□□□□□ -2.25
CLDN3O15551 AC046134.1-201ENST00000514454 666 ntBASIC1□□□□□ -2.25
CLDN3O15551 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1□□□□□ -2.25
CLDN3O15551 AC090049.2-201ENST00000550377 109 ntBASIC1□□□□□ -2.25
CLDN3O15551 AC136932.1-201ENST00000574771 208 ntBASIC1□□□□□ -2.25
CLDN3O15551 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1□□□□□ -2.25
CLDN3O15551 AC093913.1-201ENST00000614178 329 ntBASIC1□□□□□ -2.25
CLDN3O15551 AC015540.1-201ENST00000615828 501 ntBASIC1□□□□□ -2.25
CLDN3O15551 MIR3662-201ENST00000637030 95 ntBASIC1□□□□□ -2.25
CLDN3O15551 AL391516.1-201ENST00000554380 2449 ntBASIC1□□□□□ -2.25
CLDN3O15551 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
CLDN3O15551 Y_RNA.191-201ENST00000363972 113 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 RNU6-424P-201ENST00000384367 105 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 RNU6-376P-201ENST00000384731 106 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 SNORD41-201ENST00000386967 70 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 AC093850.1-201ENST00000454121 251 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 RNU7-12P-201ENST00000516030 62 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 RNU6-566P-201ENST00000516790 107 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 CBX3P8-201ENST00000532412 525 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 AC090617.3-201ENST00000573670 475 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 AC080078.2-201ENST00000603766 501 ntBASIC0.99□□□□□ -2.25
CLDN3O15551 Y_RNA.226-201ENST00000364337 114 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 RNU6-831P-201ENST00000384548 107 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 MIR562-201ENST00000384894 95 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 MIR653-201ENST00000385279 96 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 MTCYBP4-201ENST00000401524 249 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 RNU6-1054P-201ENST00000411293 104 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 AC063976.4-201ENST00000421971 163 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 AC245047.7-201ENST00000440265 293 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 RPL39P39-201ENST00000455840 151 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 RNU7-87P-201ENST00000459343 62 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 RNA5SP20-201ENST00000515976 84 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 RNU6-917P-201ENST00000516294 104 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 RNU7-28P-201ENST00000516759 62 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.98□□□□□ -2.25
CLDN3O15551 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.98□□□□□ -2.25
CLDN3O15551 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.98□□□□□ -2.25
CLDN3O15551 MIR3973-201ENST00000579824 107 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 MIR4452-201ENST00000583004 71 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 AC073544.1-201ENST00000600110 1595 ntBASIC0.98□□□□□ -2.25
CLDN3O15551 MIR373-201ENST00000362273 69 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 SNORA2.2-201ENST00000365473 135 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 RNU6-1264P-201ENST00000383891 107 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 RNU6-842P-201ENST00000384269 107 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 Y_RNA.554-201ENST00000384672 102 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
CLDN3O15551 RNU6-1148P-201ENST00000410992 104 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 AL139396.1-201ENST00000421137 167 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 AC018865.2-201ENST00000423631 129 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.97□□□□□ -2.25
CLDN3O15551 RNU6-1291P-201ENST00000516591 104 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 AL121579.1-201ENST00000555129 305 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 MIR4790-201ENST00000577799 79 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 AL357312.1-201ENST00000603879 298 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.97□□□□□ -2.25
CLDN3O15551 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.96□□□□□ -2.26
CLDN3O15551 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
CLDN3O15551 Y_RNA.89-201ENST00000363031 102 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 Y_RNA.157-201ENST00000363638 102 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 RNU4-12P-201ENST00000365233 139 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 Y_RNA.573-201ENST00000384763 105 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 MIR19B1-201ENST00000384829 87 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 RNA5SP247-201ENST00000411181 105 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.96□□□□□ -2.26
CLDN3O15551 OR9P1P-201ENST00000496431 281 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 RNU6-1278P-201ENST00000516130 107 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 RN7SKP49-201ENST00000516675 260 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 RNU6-341P-201ENST00000516973 96 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 AP002004.2-201ENST00000531656 154 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC0.96□□□□□ -2.26
CLDN3O15551 MIR3684-201ENST00000579779 74 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 MIR4661-201ENST00000582720 75 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 FAM106DP-201ENST00000586416 501 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 AC125232.2-201ENST00000592457 143 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 AC005592.1-201ENST00000566527 1640 ntBASIC0.96□□□□□ -2.26
CLDN3O15551 SNORA1B-201ENST00000362535 133 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 Y_RNA.295-201ENST00000364918 102 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 Y_RNA.436-201ENST00000384097 102 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 MIR520E-201ENST00000384867 87 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 RNU6-700P-201ENST00000391043 107 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 MIR1287-201ENST00000408492 90 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 RNA5SP118-201ENST00000410385 109 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 AC104332.1-201ENST00000440471 797 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 MTND1P17-201ENST00000448961 204 ntBASIC0.95□□□□□ -2.26
CLDN3O15551 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.95□□□□□ -2.26
CLDN3O15551 AC233266.1-201ENST00000454518 96 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 140.7 ms