Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.57□□□□□ -2
PCDHA1Q9Y5I3 AL391987.6-201ENST00000305671 199 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 MIR340-201ENST00000362125 95 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.99-201ENST00000363138 105 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 RNU6-326P-201ENST00000365480 107 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.562-201ENST00000384695 113 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 RNA5SP181-201ENST00000410246 98 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 AC016717.1-201ENST00000448918 286 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 AC006006.1-201ENST00000603082 144 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 AC025754.2-201ENST00000606491 432 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 U6.115-201ENST00000636045 103 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 FO624990.1-201ENST00000636373 85 ntBASIC2.56□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.136-201ENST00000363444 102 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 SNORA38-201ENST00000363946 132 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.237-201ENST00000364439 102 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.361-201ENST00000365515 120 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.569-201ENST00000384749 103 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 U3.40-201ENST00000408706 208 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 RNU6-57P-201ENST00000411348 103 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 AC104984.5-201ENST00000586878 94 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 MIR6715A-201ENST00000615929 79 ntBASIC2.55□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.14-201ENST00000362415 103 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.16-201ENST00000362421 102 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 SNORD114-7-201ENST00000362520 77 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 RNA5SP393-201ENST00000363423 117 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 SNORD115-30-201ENST00000364117 82 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.383-201ENST00000383855 97 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 RNU1-148P-201ENST00000384472 162 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 SNORA53-201ENST00000391141 249 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 MTND4LP30-201ENST00000454092 297 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 SERF1AP1-201ENST00000514575 187 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 SNORA4.4-201ENST00000515921 135 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 RNU6-436P-201ENST00000516171 114 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 RNU2-31P-201ENST00000516954 155 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 AC025647.1-201ENST00000517879 253 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 DEFB108E-201ENST00000524692 240 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 AC009831.4-201ENST00000620744 325 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 SDR42E1P4-201ENST00000620894 481 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 AC010297.1-201ENST00000623948 149 ntBASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.54□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.350-201ENST00000365409 98 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 RNU1-138P-201ENST00000384093 164 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 SNORD14D-201ENST00000384390 87 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 MIR1262-201ENST00000408276 93 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 RNU2-38P-201ENST00000410856 79 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 AC008134.1-201ENST00000420943 193 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 POLR2KP2-201ENST00000438155 177 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 RPL23AP3-201ENST00000453844 468 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 RNU1-131P-201ENST00000458943 161 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 snoU13.26-201ENST00000459452 105 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 RNU6-856P-201ENST00000516959 98 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 AC026271.5-201ENST00000577873 130 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 MIR5194-201ENST00000582634 120 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 MIR3124-201ENST00000582636 67 ntBASIC2.53□□□□□ -2
PCDHA1Q9Y5I3 Y_RNA.188-201ENST00000363952 111 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 AC245102.2-201ENST00000448956 180 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 snoU13.15-201ENST00000459407 104 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 RPL39P38-201ENST00000467018 153 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 AC010598.1-201ENST00000510378 103 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 RNA5SP200-201ENST00000516360 103 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 MIR4658-201ENST00000584344 65 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 AC012433.1-201ENST00000588916 398 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 AL049779.4-201ENST00000604500 156 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 AC037487.3-201ENST00000606668 112 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 MIR6132-201ENST00000622083 109 ntBASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
PCDHA1Q9Y5I3 Y_RNA.307-201ENST00000365022 117 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 RNU6-1240P-201ENST00000365155 104 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 Y_RNA.418-201ENST00000384029 102 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 AL031003.1-201ENST00000404229 172 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 SNORA11.4-201ENST00000408823 129 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 SNORD65B-201ENST00000459126 73 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 SNORA31.15-201ENST00000516771 132 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 IGKV3-31-201ENST00000523109 329 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 AC006435.5-201ENST00000624486 112 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 AL159152.1-201ENST00000635019 2587 ntBASIC2.51□□□□□ -2.01
PCDHA1Q9Y5I3 RNU6-1266P-201ENST00000362794 105 ntBASIC2.5□□□□□ -2.01
PCDHA1Q9Y5I3 Y_RNA.447-201ENST00000384184 113 ntBASIC2.5□□□□□ -2.01
PCDHA1Q9Y5I3 Y_RNA.478-201ENST00000384358 107 ntBASIC2.5□□□□□ -2.01
PCDHA1Q9Y5I3 SNORA64-201ENST00000384674 134 ntBASIC2.5□□□□□ -2.01
PCDHA1Q9Y5I3 MIR548H3-201ENST00000408771 118 ntBASIC2.5□□□□□ -2.01
PCDHA1Q9Y5I3 AC016909.1-201ENST00000415916 166 ntBASIC2.5□□□□□ -2.01
PCDHA1Q9Y5I3 SCARNA16.3-201ENST00000516595 184 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms