Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 RPS29P21-201ENST00000496272 170 ntBASIC3.76□□□□□ -1.81
NOD1Q9Y239 SNORA4.4-201ENST00000515921 135 ntBASIC3.76□□□□□ -1.81
NOD1Q9Y239 SNORD77.4-201ENST00000516158 81 ntBASIC3.76□□□□□ -1.81
NOD1Q9Y239 RNA5SP153-201ENST00000516498 76 ntBASIC3.76□□□□□ -1.81
NOD1Q9Y239 AC011604.1-201ENST00000545978 196 ntBASIC3.76□□□□□ -1.81
NOD1Q9Y239 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.76□□□□□ -1.81
NOD1Q9Y239 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
NOD1Q9Y239 MFSD8-233ENST00000641482 4860 ntBASIC3.76□□□□□ -1.81
NOD1Q9Y239 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
NOD1Q9Y239 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
NOD1Q9Y239 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.75□□□□□ -1.81
NOD1Q9Y239 U8.1-201ENST00000362843 134 ntBASIC3.75□□□□□ -1.81
NOD1Q9Y239 AL161788.1-201ENST00000441805 169 ntBASIC3.75□□□□□ -1.81
NOD1Q9Y239 RPS26P15-201ENST00000488067 348 ntBASIC3.75□□□□□ -1.81
NOD1Q9Y239 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.75□□□□□ -1.81
NOD1Q9Y239 SEM1P1-201ENST00000506694 209 ntBASIC3.75□□□□□ -1.81
NOD1Q9Y239 Y_RNA.692-201ENST00000516627 105 ntBASIC3.75□□□□□ -1.81
NOD1Q9Y239 Y_RNA.712-201ENST00000517011 92 ntBASIC3.75□□□□□ -1.81
NOD1Q9Y239 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.75□□□□□ -1.81
NOD1Q9Y239 MIR5004-201ENST00000579078 107 ntBASIC3.75□□□□□ -1.81
NOD1Q9Y239 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
NOD1Q9Y239 TNPO1P3-201ENST00000436471 2662 ntBASIC3.75□□□□□ -1.81
NOD1Q9Y239 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.74□□□□□ -1.81
NOD1Q9Y239 Y_RNA.91-201ENST00000363042 107 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 RNU6-1209P-201ENST00000363655 107 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 Y_RNA.796-201ENST00000364268 102 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 Y_RNA.634-201ENST00000364811 113 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 Y_RNA.799-201ENST00000364992 102 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 MIR1253-201ENST00000408273 105 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.74□□□□□ -1.81
NOD1Q9Y239 AL158823.1-201ENST00000418441 478 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 AC063976.3-201ENST00000426849 329 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 AC006989.1-201ENST00000427212 131 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 SNORD11-201ENST00000459124 84 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 RNA5SP341-201ENST00000516261 117 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 RN7SKP83-201ENST00000516512 178 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
NOD1Q9Y239 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 MIR4727-201ENST00000622232 55 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 AC058791.1-201ENST00000608412 3198 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 AC018555.1-201ENST00000567548 1980 ntBASIC3.74□□□□□ -1.81
NOD1Q9Y239 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NOD1Q9Y239 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
NOD1Q9Y239 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
NOD1Q9Y239 Y_RNA.120-201ENST00000363304 110 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 RNU1-23P-201ENST00000363361 144 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 RNU6-429P-201ENST00000384582 108 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 RNU6-476P-201ENST00000384726 107 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 AC123900.1-201ENST00000420390 96 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 COTL1P1-201ENST00000422309 375 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.73□□□□□ -1.81
NOD1Q9Y239 CYP2C59P-201ENST00000457790 269 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 AC093259.1-201ENST00000509755 300 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 RNU6-991P-201ENST00000516168 107 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 AC006386.2-201ENST00000624491 75 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 AC012005.1-201ENST00000624575 75 ntBASIC3.73□□□□□ -1.81
NOD1Q9Y239 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.73□□□□□ -1.81
NOD1Q9Y239 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.73□□□□□ -1.81
NOD1Q9Y239 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
NOD1Q9Y239 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.72□□□□□ -1.81
NOD1Q9Y239 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.72□□□□□ -1.81
NOD1Q9Y239 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NOD1Q9Y239 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NOD1Q9Y239 RNU4-47P-201ENST00000410876 114 ntBASIC3.72□□□□□ -1.81
NOD1Q9Y239 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.72□□□□□ -1.81
NOD1Q9Y239 RPS29P12-201ENST00000460178 152 ntBASIC3.72□□□□□ -1.81
NOD1Q9Y239 AC131055.1-201ENST00000584626 316 ntBASIC3.72□□□□□ -1.81
NOD1Q9Y239 MIR6129-201ENST00000616087 109 ntBASIC3.72□□□□□ -1.81
NOD1Q9Y239 U6.73-201ENST00000619194 103 ntBASIC3.72□□□□□ -1.81
NOD1Q9Y239 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
NOD1Q9Y239 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NOD1Q9Y239 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NOD1Q9Y239 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
NOD1Q9Y239 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.72□□□□□ -1.81
NOD1Q9Y239 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.72□□□□□ -1.81
NOD1Q9Y239 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
NOD1Q9Y239 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NOD1Q9Y239 MIR422A-201ENST00000362286 90 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 RNA5SP42-201ENST00000364278 115 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 SNORA68.1-201ENST00000364537 132 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 Y_RNA.332-201ENST00000365271 113 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 MIR95-201ENST00000385072 81 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 RNU6-856P-201ENST00000516959 98 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 AC097639.2-201ENST00000603159 172 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 U2.20-201ENST00000613956 192 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 Pinc.1-201ENST00000616452 154 ntBASIC3.71□□□□□ -1.82
NOD1Q9Y239 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
NOD1Q9Y239 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
NOD1Q9Y239 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.7□□□□□ -1.82
NOD1Q9Y239 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
NOD1Q9Y239 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
NOD1Q9Y239 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.7□□□□□ -1.82
NOD1Q9Y239 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.7□□□□□ -1.82
NOD1Q9Y239 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NOD1Q9Y239 RNU6-1144P-201ENST00000384247 104 ntBASIC3.7□□□□□ -1.82
NOD1Q9Y239 Y_RNA.500-201ENST00000384466 111 ntBASIC3.7□□□□□ -1.82
NOD1Q9Y239 MIR562-201ENST00000384894 95 ntBASIC3.7□□□□□ -1.82
NOD1Q9Y239 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
NOD1Q9Y239 SNORA26-201ENST00000391286 122 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms