Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU6-1235P-201ENST00000384559 107 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 SRIP3-201ENST00000413200 219 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 AL356320.1-201ENST00000429616 163 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 AC009238.1-201ENST00000442165 424 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 AL357134.1-201ENST00000445848 426 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 AC009237.6-201ENST00000446969 424 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 AC011753.1-201ENST00000451001 220 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 PRELID3BP1-201ENST00000457142 540 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 RNU6-498P-201ENST00000459468 107 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 RNU7-57P-201ENST00000459540 60 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 AC010531.2-201ENST00000465012 153 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 AC114982.1-201ENST00000469402 321 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 RNU6-1338P-201ENST00000516328 91 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 RNU2-34P-201ENST00000516534 121 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 RNU7-110P-201ENST00000516891 62 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 snoZ196.1-201ENST00000625269 89 ntBASIC2.36□□□□□ -2.03
VPS4AQ9UN37 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS4AQ9UN37 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.36□□□□□ -2.03
VPS4AQ9UN37 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
VPS4AQ9UN37 RNA5SP289-201ENST00000362332 137 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.136-201ENST00000363444 102 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 MIR27B-201ENST00000385129 97 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.602-201ENST00000410535 92 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 RNU6-1132P-201ENST00000459214 107 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 HMGB3P3-201ENST00000510526 400 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 MTND1P19-201ENST00000511780 315 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 RNU6-948P-201ENST00000516374 107 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 MIR5694-201ENST00000581190 76 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.35□□□□□ -2.03
VPS4AQ9UN37 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.35□□□□□ -2.03
VPS4AQ9UN37 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.35□□□□□ -2.03
VPS4AQ9UN37 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
VPS4AQ9UN37 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
VPS4AQ9UN37 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.14-201ENST00000362415 103 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.16-201ENST00000362421 102 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 SNORD114-7-201ENST00000362520 77 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 SNORD115-30-201ENST00000364117 82 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 Y_RNA.331-201ENST00000365267 102 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 RNU6-326P-201ENST00000365480 107 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 RNU6-438P-201ENST00000365561 103 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 MIR524-201ENST00000385242 87 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 AL139109.1-201ENST00000455491 297 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.34□□□□□ -2.03
VPS4AQ9UN37 RNU6-991P-201ENST00000516168 107 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 RNU6-107P-201ENST00000516643 102 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS4AQ9UN37 CYCSP26-201ENST00000534107 320 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.34□□□□□ -2.03
VPS4AQ9UN37 MIR3684-201ENST00000579779 74 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 AC008749.1-201ENST00000597650 306 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 AC006006.1-201ENST00000603082 144 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 AC245884.12-201ENST00000615364 59 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 U6.115-201ENST00000636045 103 ntBASIC2.34□□□□□ -2.03
VPS4AQ9UN37 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS4AQ9UN37 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS4AQ9UN37 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
VPS4AQ9UN37 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.33□□□□□ -2.04
VPS4AQ9UN37 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.99-201ENST00000363138 105 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.237-201ENST00000364439 102 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 SNORD114-30-201ENST00000364448 72 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 RNU1-91P-201ENST00000364746 163 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 SNORA72.2-201ENST00000365028 127 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 RNU1-148P-201ENST00000384472 162 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 RNU6-21P-201ENST00000384710 107 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 MIR1289-2-201ENST00000408360 111 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 RN7SKP223-201ENST00000410582 62 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.618-201ENST00000410949 107 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.33□□□□□ -2.04
VPS4AQ9UN37 RN7SL636P-201ENST00000497504 294 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 SERF1AP1-201ENST00000514575 187 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 RNU6-436P-201ENST00000516171 114 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 AC012433.1-201ENST00000588916 398 ntBASIC2.33□□□□□ -2.04
VPS4AQ9UN37 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AL391987.6-201ENST00000305671 199 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 RNU6-743P-201ENST00000364151 106 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 Y_RNA.350-201ENST00000365409 98 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 RNU6-418P-201ENST00000384035 107 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 SNORD58.1-201ENST00000391313 66 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 MIR1262-201ENST00000408276 93 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 RNU2-38P-201ENST00000410856 79 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 EDDM3CP-201ENST00000415977 425 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC074290.1-201ENST00000448883 135 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC016717.1-201ENST00000448918 286 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 RPL23AP3-201ENST00000453844 468 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 RNA5SP320-201ENST00000516263 124 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 RNU6-856P-201ENST00000516959 98 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC025647.1-201ENST00000517879 253 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC006001.4-201ENST00000622243 395 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS4AQ9UN37 AC007336.1-201ENST00000576365 3828 ntBASIC2.32□□□□□ -2.04
VPS4AQ9UN37 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms