Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
DDX41Q9UJV9 SNORA27.1-201ENST00000362604 124 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 SNORA38-201ENST00000363946 132 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 Y_RNA.287-201ENST00000364853 94 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 RNU6-407P-201ENST00000365280 104 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 Y_RNA.368-201ENST00000365547 113 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 RNU6-211P-201ENST00000384047 107 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 AL355796.1-201ENST00000406706 323 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 MIR1253-201ENST00000408273 105 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 Y_RNA.793-201ENST00000411222 111 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 Y_RNA.626-201ENST00000411288 95 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 RNU2-64P-201ENST00000411315 191 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 EDDM3CP-201ENST00000415977 425 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.24□□□□□ -1.89
DDX41Q9UJV9 AC087499.2-201ENST00000432861 149 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 RPL23AP7-203ENST00000449021 469 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 SNORD116-28-201ENST00000516123 91 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 AC004486.1-201ENST00000546846 233 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 AL078604.3-201ENST00000615580 211 ntBASIC3.24□□□□□ -1.89
DDX41Q9UJV9 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
DDX41Q9UJV9 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 AC062016.1-201ENST00000355719 319 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 Y_RNA.99-201ENST00000363138 105 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 SNORA25.6-201ENST00000364121 118 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 Y_RNA.274-201ENST00000364714 101 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX41Q9UJV9 RNU6-651P-201ENST00000411040 105 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 AC009310.1-201ENST00000414414 451 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 HSPE1P13-201ENST00000451143 297 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX41Q9UJV9 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 RNU6-1146P-201ENST00000516282 102 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 AC027419.1-201ENST00000522976 328 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 AC026271.5-201ENST00000577873 130 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 Z83818.1-201ENST00000603584 150 ntBASIC3.23□□□□□ -1.89
DDX41Q9UJV9 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.23□□□□□ -1.89
DDX41Q9UJV9 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX41Q9UJV9 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
DDX41Q9UJV9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.22□□□□□ -1.89
DDX41Q9UJV9 RN7SKP284-201ENST00000411002 343 ntBASIC3.22□□□□□ -1.89
DDX41Q9UJV9 RNA5SP184-201ENST00000411071 108 ntBASIC3.22□□□□□ -1.89
DDX41Q9UJV9 RNA5SP492-201ENST00000411330 114 ntBASIC3.22□□□□□ -1.89
DDX41Q9UJV9 RNA5SP20-201ENST00000515976 84 ntBASIC3.22□□□□□ -1.89
DDX41Q9UJV9 RNU6-856P-201ENST00000516959 98 ntBASIC3.22□□□□□ -1.89
DDX41Q9UJV9 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
DDX41Q9UJV9 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
DDX41Q9UJV9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
DDX41Q9UJV9 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
DDX41Q9UJV9 MIR411-201ENST00000362239 96 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 Y_RNA.262-201ENST00000364641 102 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 RNU6-763P-201ENST00000390865 106 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 AL109933.2-201ENST00000452651 260 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 Y_RNA.644-201ENST00000459006 113 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 RPS26P55-201ENST00000471178 356 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 Y_RNA.674-201ENST00000516362 113 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.21□□□□□ -1.9
DDX41Q9UJV9 MIR3670-2-201ENST00000582974 65 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 MIR3670-1-201ENST00000584160 65 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 MIR3670-3-201ENST00000584855 65 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 AC098479.1-201ENST00000609225 154 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 MIR3670-4-201ENST00000612260 65 ntBASIC3.21□□□□□ -1.9
DDX41Q9UJV9 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
DDX41Q9UJV9 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
DDX41Q9UJV9 MT-TR-201ENST00000387439 65 ntBASIC3.2□□□□□ -1.9
DDX41Q9UJV9 RNU7-26P-201ENST00000458980 63 ntBASIC3.2□□□□□ -1.9
DDX41Q9UJV9 RPS27P22-201ENST00000478056 241 ntBASIC3.2□□□□□ -1.9
DDX41Q9UJV9 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX41Q9UJV9 AC024405.2-202ENST00000532731 184 ntBASIC3.2□□□□□ -1.9
DDX41Q9UJV9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.2□□□□□ -1.9
DDX41Q9UJV9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
DDX41Q9UJV9 CENPCP1-201ENST00000533085 2578 ntBASIC3.2□□□□□ -1.9
DDX41Q9UJV9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.2□□□□□ -1.9
DDX41Q9UJV9 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
DDX41Q9UJV9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
DDX41Q9UJV9 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
DDX41Q9UJV9 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
DDX41Q9UJV9 Y_RNA.124-201ENST00000363339 93 ntBASIC3.19□□□□□ -1.9
DDX41Q9UJV9 RNU6-899P-201ENST00000363947 107 ntBASIC3.19□□□□□ -1.9
DDX41Q9UJV9 RNU6-801P-201ENST00000364087 105 ntBASIC3.19□□□□□ -1.9
DDX41Q9UJV9 Y_RNA.304-201ENST00000365011 112 ntBASIC3.19□□□□□ -1.9
DDX41Q9UJV9 RNU6-160P-201ENST00000384591 107 ntBASIC3.19□□□□□ -1.9
DDX41Q9UJV9 Y_RNA.637-201ENST00000459424 114 ntBASIC3.19□□□□□ -1.9
DDX41Q9UJV9 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.19□□□□□ -1.9
DDX41Q9UJV9 AC087441.2-201ENST00000529141 262 ntBASIC3.19□□□□□ -1.9
DDX41Q9UJV9 AL137100.2-201ENST00000555786 315 ntBASIC3.19□□□□□ -1.9
DDX41Q9UJV9 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
DDX41Q9UJV9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
DDX41Q9UJV9 RNU1-112P-201ENST00000364401 164 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 Y_RNA.310-201ENST00000365063 113 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 SNORA72.4-201ENST00000384174 132 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 OOSP1P1-201ENST00000423265 274 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 PIGPP3-201ENST00000425307 415 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 AC063976.3-201ENST00000426849 329 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 CR769767.1-201ENST00000436337 346 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 HSPE1P21-201ENST00000438283 308 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 RNU6-1337P-201ENST00000516525 95 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 RPPH1-2P-201ENST00000516688 293 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 AL008718.3-201ENST00000610217 321 ntBASIC3.18□□□□□ -1.9
DDX41Q9UJV9 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 171.2 ms