Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RNU4-54P-201ENST00000516428 129 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 RNU11-2P-201ENST00000516898 142 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.52□□□□□ -2.33
USP42Q9H9J4 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.52□□□□□ -2.33
USP42Q9H9J4 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.52□□□□□ -2.33
USP42Q9H9J4 AL162424.1-201ENST00000602325 221 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 AC012557.2-201ENST00000605919 418 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 AC092807.2-201ENST00000609367 243 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 AC017083.3-201ENST00000609955 700 ntBASIC0.52□□□□□ -2.33
USP42Q9H9J4 SNORD115-8-201ENST00000363856 82 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 SNORD115-38-201ENST00000365037 82 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.51□□□□□ -2.33
USP42Q9H9J4 CALM2P4-201ENST00000430810 426 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 MRPS10P2-201ENST00000431226 381 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 STAG3L5P-204ENST00000443759 179 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 snoU13.25-201ENST00000458945 104 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 RNU7-90P-201ENST00000459216 62 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 COX6CP6-201ENST00000490840 228 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 RNU4-57P-201ENST00000515980 135 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 SNORA19.2-201ENST00000516013 114 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 AC090049.2-201ENST00000550377 109 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.51□□□□□ -2.33
USP42Q9H9J4 AC023932.2-201ENST00000603176 175 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 AL353765.1-201ENST00000605514 183 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 SNORD11B-201ENST00000607707 90 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 AC007684.1-201ENST00000609671 477 ntBASIC0.51□□□□□ -2.33
USP42Q9H9J4 RNU6-137P-201ENST00000363680 108 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 RNU4-66P-201ENST00000365199 138 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 Y_RNA.415-201ENST00000384012 112 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 RNU6-110P-201ENST00000384508 104 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 MTCO1P20-201ENST00000425366 358 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 MTCO1P29-201ENST00000496868 288 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.5□□□□□ -2.33
USP42Q9H9J4 AC091133.4-201ENST00000511142 308 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 RNA5SP401-201ENST00000515920 127 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 RNU6-1332P-201ENST00000516666 104 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 RNU6-58P-201ENST00000517143 103 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 AC100830.2-201ENST00000581636 240 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 AL357312.1-201ENST00000603879 298 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 AC087752.4-201ENST00000605911 462 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 AL158209.2-201ENST00000619266 216 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 MTND4P12-201ENST00000498999 1377 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 AC073544.1-201ENST00000600110 1595 ntBASIC0.5□□□□□ -2.33
USP42Q9H9J4 Y_RNA.1-201ENST00000352915 104 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 RNU6-727P-201ENST00000363592 107 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 SNORD113-7-201ENST00000363762 77 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 SNORA50A-201ENST00000384225 134 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 U8.16-201ENST00000391279 133 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC0.49□□□□□ -2.33
USP42Q9H9J4 FABP5P4-201ENST00000437203 171 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.49□□□□□ -2.33
USP42Q9H9J4 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.49□□□□□ -2.33
USP42Q9H9J4 AC093850.1-201ENST00000454121 251 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 RNU7-187P-201ENST00000458985 68 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 RNU7-21P-201ENST00000459430 62 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 RNU6-261P-201ENST00000459506 102 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 RNU6-1208P-201ENST00000459588 107 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 Y_RNA.654-201ENST00000497848 106 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 LRRC34P1-201ENST00000542742 915 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.49□□□□□ -2.33
USP42Q9H9J4 MIR4760-201ENST00000585040 80 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 AL133215.3-201ENST00000609801 448 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 uc_338.17-201ENST00000619633 179 ntBASIC0.49□□□□□ -2.33
USP42Q9H9J4 U3.8-201ENST00000363675 217 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 RNU6-873P-201ENST00000363833 107 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
USP42Q9H9J4 RNU6-245P-201ENST00000384020 107 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 RNU6-424P-201ENST00000384367 105 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 MIR32-201ENST00000384965 70 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 MIR10B-201ENST00000385011 110 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 SNORA75.2-201ENST00000391138 150 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 SNORA75.3-201ENST00000391231 150 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 AL590002.1-201ENST00000406554 418 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 AL035398.1-201ENST00000430869 322 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.48□□□□□ -2.33
USP42Q9H9J4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.48□□□□□ -2.33
USP42Q9H9J4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.48□□□□□ -2.33
USP42Q9H9J4 MTND3P16-201ENST00000452205 344 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 NDUFB4P10-201ENST00000452541 359 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 SNORD65B-201ENST00000459126 73 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 AC091179.3-201ENST00000474761 144 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 SNORA25.14-201ENST00000516481 132 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 RNA5SP54-201ENST00000516951 92 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.48□□□□□ -2.33
USP42Q9H9J4 AC027288.2-201ENST00000553028 243 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 PRELID3BP2-201ENST00000605362 201 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 AP001330.5-201ENST00000607176 411 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 AC073114.1-201ENST00000612027 490 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 AL391262.2-201ENST00000622466 494 ntBASIC0.48□□□□□ -2.33
USP42Q9H9J4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.48□□□□□ -2.33
USP42Q9H9J4 RNU6-522P-201ENST00000364497 107 ntBASIC0.47□□□□□ -2.33
USP42Q9H9J4 Y_RNA.330-201ENST00000365230 109 ntBASIC0.47□□□□□ -2.33
USP42Q9H9J4 SNORD116-13-201ENST00000384408 92 ntBASIC0.47□□□□□ -2.33
USP42Q9H9J4 MIR514A2-201ENST00000385131 88 ntBASIC0.47□□□□□ -2.33
USP42Q9H9J4 MIR514A3-201ENST00000385132 88 ntBASIC0.47□□□□□ -2.33
USP42Q9H9J4 SNORD37.1-201ENST00000390968 65 ntBASIC0.47□□□□□ -2.33
USP42Q9H9J4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.47□□□□□ -2.33
USP42Q9H9J4 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.47□□□□□ -2.33
USP42Q9H9J4 RNU7-94P-201ENST00000459576 63 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms