Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC105758.1-201ENST00000506038 399 ntBASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 MRPS17P9-201ENST00000511924 393 ntBASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 Y_RNA.661-201ENST00000516003 99 ntBASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 RNU6-1146P-201ENST00000516282 102 ntBASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 snoZ196.1-201ENST00000625269 89 ntBASIC1.9□□□□□ -2.11
ZNF541Q9H0D2 ZNF209P-201ENST00000593450 2304 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 MIR96-201ENST00000362288 78 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 RNU6-874P-201ENST00000362390 105 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 RNU6-1266P-201ENST00000362794 105 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 Y_RNA.187-201ENST00000363918 113 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 Y_RNA.498-201ENST00000384460 102 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 RNU6-1235P-201ENST00000384559 107 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 RNU7-152P-201ENST00000458982 64 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 RNU6-498P-201ENST00000459468 107 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 CYCSP23-201ENST00000519781 313 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 MIR5094-201ENST00000578766 85 ntBASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.89□□□□□ -2.11
ZNF541Q9H0D2 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 CENPCP1-201ENST00000533085 2578 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AC073544.1-201ENST00000600110 1595 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 RNU6-862P-201ENST00000362804 105 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 U3.8-201ENST00000363675 217 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 Y_RNA.428-201ENST00000384078 102 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 MIR628-201ENST00000385229 95 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 MIR548B-201ENST00000385247 97 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 MIR676-201ENST00000390702 67 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 RNU2-7P-201ENST00000410794 178 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 RNU6-1001P-201ENST00000411265 100 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AL158823.1-201ENST00000418441 478 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 EIF1P2-201ENST00000428233 350 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 HMGN2P34-201ENST00000437647 269 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 MTND2P29-201ENST00000438595 412 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AC099799.1-201ENST00000439809 192 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AC011406.1-201ENST00000512440 370 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 RNA5SP364-201ENST00000516938 78 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AC011604.1-201ENST00000545978 196 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 MIR3618-201ENST00000580330 88 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AC136443.5-201ENST00000603741 370 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AL773524.1-201ENST00000614065 229 ntBASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
ZNF541Q9H0D2 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 Y_RNA.61-201ENST00000362835 102 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 RNU1-96P-201ENST00000364163 162 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AC008134.1-201ENST00000420943 193 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AC060773.1-201ENST00000421698 310 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AL353689.1-201ENST00000438895 199 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 PCNPP5-201ENST00000452246 481 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 RN7SL274P-201ENST00000492268 272 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 RNVU1-2-201ENST00000516326 135 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 RNU6-699P-201ENST00000517081 110 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 MIR2355-201ENST00000517199 87 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AL096840.1-201ENST00000603287 93 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AC080078.3-201ENST00000605407 463 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AC022709.1-201ENST00000615967 87 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 AC091895.1-201ENST00000624494 256 ntBASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
ZNF541Q9H0D2 MIR340-201ENST00000362125 95 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 RNU6-1040P-201ENST00000383974 107 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 SNORA67.2-201ENST00000384300 149 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 RNA5SP475-201ENST00000410568 110 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 U8.22-201ENST00000459141 133 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 RNU6-856P-201ENST00000516959 98 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 SNORD116.3-201ENST00000517176 78 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 SNORA31.24-201ENST00000517232 57 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 AC008749.1-201ENST00000597650 306 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 AL353770.2-201ENST00000620024 78 ntBASIC1.86□□□□□ -2.11
ZNF541Q9H0D2 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 RNY3P11-201ENST00000364153 102 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 RNU6-1240P-201ENST00000365155 104 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 Y_RNA.419-201ENST00000384041 102 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 MIR329-1-201ENST00000385028 80 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 MIR517C-201ENST00000385103 95 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 MIR559-201ENST00000385188 96 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 RNA5SP323-201ENST00000391094 133 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 MTND4P28-201ENST00000426217 387 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 RPL23AP3-201ENST00000453844 468 ntBASIC1.85□□□□□ -2.11
ZNF541Q9H0D2 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms