Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 RNA5SP323-201ENST00000391094 133 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 U3.40-201ENST00000408706 208 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 SNORA11.4-201ENST00000408823 129 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 RPL21P38-201ENST00000418090 167 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 AC024067.1-201ENST00000426199 223 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 AC018634.1-201ENST00000437554 401 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 MTND3P2-201ENST00000438452 342 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.14□□□□□ -2.07
NPAS1Q99742 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.14□□□□□ -2.07
NPAS1Q99742 HMGB3P17-201ENST00000504195 649 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 RNU2-12P-201ENST00000517216 168 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 AL137100.2-201ENST00000555786 315 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 AC009127.3-201ENST00000570531 403 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 MIR4423-201ENST00000580922 80 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 AC037487.3-201ENST00000606668 112 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 AC067747.1-201ENST00000608026 250 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 CTSLP2-204ENST00000629029 392 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 ZNF720P1-201ENST00000562403 1939 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
NPAS1Q99742 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
NPAS1Q99742 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
NPAS1Q99742 AC016717.2-201ENST00000609089 5141 ntBASIC2.14□□□□□ -2.07
NPAS1Q99742 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.14□□□□□ -2.07
NPAS1Q99742 RNU6-862P-201ENST00000362804 105 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 RNU6-271P-201ENST00000363858 105 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 Y_RNA.286-201ENST00000364813 102 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 MIR215-201ENST00000384858 110 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 RNA5SP465-201ENST00000391195 109 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 RNU6-1186P-201ENST00000410429 97 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 RNU6-121P-201ENST00000410525 99 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.13□□□□□ -2.07
NPAS1Q99742 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.13□□□□□ -2.07
NPAS1Q99742 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.13□□□□□ -2.07
NPAS1Q99742 RPS15AP28-201ENST00000435088 386 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 SUMO1P2-201ENST00000452524 304 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 SNORA70.12-201ENST00000516084 153 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 AC023157.2-201ENST00000540596 141 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.13□□□□□ -2.07
NPAS1Q99742 MIR3169-201ENST00000578032 83 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 AC007229.1-201ENST00000590455 412 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.13□□□□□ -2.07
NPAS1Q99742 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
NPAS1Q99742 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
NPAS1Q99742 MTND5P6-201ENST00000422338 1798 ntBASIC2.13□□□□□ -2.07
NPAS1Q99742 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.13□□□□□ -2.07
NPAS1Q99742 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
NPAS1Q99742 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NPAS1Q99742 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.12□□□□□ -2.07
NPAS1Q99742 snoU2-30.2-201ENST00000362805 70 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 RNU1-96P-201ENST00000364163 162 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 Y_RNA.329-201ENST00000365209 107 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 Y_RNA.383-201ENST00000383855 97 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 SNORA53-201ENST00000391141 249 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 AL031003.1-201ENST00000404229 172 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 SNORD23.1-201ENST00000408212 104 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 MIR548F4-201ENST00000408515 105 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 AC016909.1-201ENST00000415916 166 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.12□□□□□ -2.07
NPAS1Q99742 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.12□□□□□ -2.07
NPAS1Q99742 AL121890.1-201ENST00000435457 205 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 AL353689.1-201ENST00000438895 199 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 AC010409.1-201ENST00000487382 476 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.12□□□□□ -2.07
NPAS1Q99742 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.12□□□□□ -2.07
NPAS1Q99742 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.12□□□□□ -2.07
NPAS1Q99742 AC005786.1-201ENST00000588553 154 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.15-201ENST00000611544 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.16-201ENST00000613119 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.12-201ENST00000613778 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.20-201ENST00000613956 192 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.9-201ENST00000615427 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.11-201ENST00000616345 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.2-201ENST00000616535 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.3-201ENST00000617785 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.19-201ENST00000618602 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 RNU2-1-201ENST00000618664 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.6-201ENST00000619225 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.5-201ENST00000619465 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 U2.10-201ENST00000620268 191 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.12□□□□□ -2.07
NPAS1Q99742 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
NPAS1Q99742 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
NPAS1Q99742 AC010615.1-201ENST00000594254 1764 ntBASIC2.12□□□□□ -2.07
NPAS1Q99742 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NPAS1Q99742 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.12□□□□□ -2.07
NPAS1Q99742 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NPAS1Q99742 Y_RNA.243-201ENST00000364481 109 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 RNU6-514P-201ENST00000384208 107 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 Y_RNA.461-201ENST00000384263 103 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 RNU6-102P-201ENST00000384485 104 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 Y_RNA.569-201ENST00000384749 103 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 AL355796.1-201ENST00000406706 323 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 HMGN2P38-201ENST00000423806 265 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 TRBVB-201ENST00000477100 408 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 RPS29P21-201ENST00000496272 170 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 MTCO2P24-201ENST00000515611 426 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 RNA5SP20-201ENST00000515976 84 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 RNA5SP281-201ENST00000516504 135 ntBASIC2.11□□□□□ -2.07
NPAS1Q99742 SNORA31.25-201ENST00000517242 134 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms