Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MIR548B-201ENST00000385247 97 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 RNA5SP212-201ENST00000391223 107 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 MIR320B2-201ENST00000408479 138 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 MIR1283-1-201ENST00000408494 87 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 RNU6-985P-201ENST00000410182 104 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 Y_RNA.595-201ENST00000410403 105 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 HMGN2P3-201ENST00000433603 273 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 HMGN2P5-201ENST00000436882 273 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 UQCRBP2-201ENST00000447827 297 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 AC016925.1-201ENST00000458303 298 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 AC010531.2-201ENST00000465012 153 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 RNU6-408P-201ENST00000515910 100 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 RNU6-764P-201ENST00000516396 105 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 RNU6-966P-201ENST00000516479 104 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 Y_RNA.715-201ENST00000517082 110 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 AL442663.2-201ENST00000554385 511 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.81□□□□□ -2.12
USP28Q96RU2 AL078596.1-201ENST00000624856 447 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 AC008873.1-201ENST00000625051 138 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 AC068205.3-201ENST00000636385 468 ntBASIC1.81□□□□□ -2.12
USP28Q96RU2 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.8□□□□□ -2.12
USP28Q96RU2 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
USP28Q96RU2 Y_RNA.105-201ENST00000363182 111 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 SNORD114-6-201ENST00000364393 72 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 Y_RNA.332-201ENST00000365271 113 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 SNORD14D-201ENST00000384390 87 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 RNU6-1026P-201ENST00000384465 108 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 SNORD78.2-201ENST00000391076 69 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 AL357139.1-201ENST00000407792 426 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 MTCO3P19-201ENST00000415864 321 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 CYCSP49-201ENST00000420810 319 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 BX510359.4-201ENST00000423750 193 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 PCNPP5-201ENST00000452246 481 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 AC010655.3-201ENST00000478818 450 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 AC067942.3-201ENST00000512025 362 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 RNU6-295P-201ENST00000516901 104 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 MIR4713-201ENST00000582691 75 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 AC006504.6-201ENST00000590142 199 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 AC013412.1-201ENST00000610687 192 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 AL138825.1-201ENST00000618587 192 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.8□□□□□ -2.12
USP28Q96RU2 Y_RNA.162-201ENST00000363683 102 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 RNU6-806P-201ENST00000365147 105 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 RNU6-438P-201ENST00000365561 103 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 MIR586-201ENST00000385035 97 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 RNU6-101P-201ENST00000410323 104 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.79□□□□□ -2.12
USP28Q96RU2 AC139712.2-201ENST00000424302 339 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 SDAD1P3-201ENST00000427380 333 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.79□□□□□ -2.12
USP28Q96RU2 FCF1P4-201ENST00000448326 183 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 RNU6-625P-201ENST00000459412 107 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 RNU6-327P-201ENST00000516270 127 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 RNU6-107P-201ENST00000516643 102 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 AC131281.1-201ENST00000522984 164 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 AC022616.4-201ENST00000522985 181 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 AC023442.1-201ENST00000531247 422 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 AC018448.1-201ENST00000552843 316 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 AC008737.2-201ENST00000599446 118 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 RPS29P30-201ENST00000600975 111 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 AL390123.1-201ENST00000603216 237 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.79□□□□□ -2.12
USP28Q96RU2 MIR502-201ENST00000606349 86 ntBASIC1.79□□□□□ -2.12
USP28Q96RU2 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
USP28Q96RU2 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
USP28Q96RU2 Y_RNA.210-201ENST00000364161 110 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 Y_RNA.512-201ENST00000384518 102 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 MIR320A-201ENST00000385302 82 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 MIR1252-201ENST00000408861 65 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 SRIP3-201ENST00000413200 219 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 RAB28P5-201ENST00000427490 651 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.78□□□□□ -2.12
USP28Q96RU2 MTCO1P44-201ENST00000441935 243 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 RNA5SP57-201ENST00000459463 123 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 AC093852.1-201ENST00000503587 266 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 Y_RNA.720-201ENST00000517166 92 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 DEFB122-202ENST00000569013 197 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 AC136932.1-201ENST00000574771 208 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 RPL17P51-201ENST00000605218 238 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
USP28Q96RU2 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.78□□□□□ -2.12
USP28Q96RU2 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
USP28Q96RU2 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
USP28Q96RU2 RNU6-454P-201ENST00000364292 107 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 RNU4-50P-201ENST00000364361 141 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 RNU6-1164P-201ENST00000364428 107 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 AC117470.1-201ENST00000381974 330 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 RNU6-975P-201ENST00000384296 105 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 MIR1323-201ENST00000408090 73 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 RNU6-121P-201ENST00000410525 99 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 AC123900.1-201ENST00000420390 96 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 ELOCP20-201ENST00000422460 345 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.77□□□□□ -2.13
USP28Q96RU2 RNU6-897P-201ENST00000517135 105 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.77□□□□□ -2.13
USP28Q96RU2 MIR4753-201ENST00000585119 83 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 AL121655.1-201ENST00000605811 308 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.77□□□□□ -2.13
USP28Q96RU2 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.77□□□□□ -2.13
USP28Q96RU2 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms