Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 Y_RNA.106-201ENST00000363189 100 ntBASIC1.3□□□□□ -2.2
ZNF560Q96MR9 RPL31P58-201ENST00000469001 379 ntBASIC1.3□□□□□ -2.2
ZNF560Q96MR9 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.3□□□□□ -2.2
ZNF560Q96MR9 AC010598.1-201ENST00000510378 103 ntBASIC1.3□□□□□ -2.2
ZNF560Q96MR9 AC026782.1-201ENST00000512952 449 ntBASIC1.3□□□□□ -2.2
ZNF560Q96MR9 AF235103.2-201ENST00000525753 346 ntBASIC1.3□□□□□ -2.2
ZNF560Q96MR9 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.3□□□□□ -2.2
ZNF560Q96MR9 AL162424.1-201ENST00000602325 221 ntBASIC1.3□□□□□ -2.2
ZNF560Q96MR9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.3□□□□□ -2.2
ZNF560Q96MR9 Y_RNA.48-201ENST00000362710 103 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 MIR190B-201ENST00000401119 79 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 EIF1P2-201ENST00000428233 350 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.29□□□□□ -2.2
ZNF560Q96MR9 AC046134.1-201ENST00000514454 666 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 RNU6-718P-201ENST00000516166 105 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 AC093023.1-201ENST00000547375 507 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 CYP3A52P-201ENST00000563326 91 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.29□□□□□ -2.2
ZNF560Q96MR9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.29□□□□□ -2.2
ZNF560Q96MR9 MIR3684-201ENST00000579779 74 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 MIR4438-201ENST00000585271 93 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.29□□□□□ -2.2
ZNF560Q96MR9 MTND5P16-201ENST00000460269 1703 ntBASIC1.29□□□□□ -2.2
ZNF560Q96MR9 Y_RNA.4-201ENST00000362333 112 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 Y_RNA.86-201ENST00000363020 111 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 RNU11-5P-201ENST00000391216 129 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 AL034345.1-201ENST00000407768 123 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 MIR548K-201ENST00000408406 116 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 MRPS10P1-201ENST00000448483 130 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 RNU6-107P-201ENST00000516643 102 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 RNU6-1016P-201ENST00000516689 94 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 SUMO2P16-201ENST00000519475 264 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.28□□□□□ -2.2
ZNF560Q96MR9 MIR3664-201ENST00000579074 99 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.28□□□□□ -2.2
ZNF560Q96MR9 AL513423.1-201ENST00000621695 132 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 AC073869.6-201ENST00000640656 341 ntBASIC1.28□□□□□ -2.2
ZNF560Q96MR9 AC018630.2-201ENST00000534866 2403 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 RNU6-222P-201ENST00000362438 107 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.364-201ENST00000365532 101 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 MIR329-1-201ENST00000385028 80 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
ZNF560Q96MR9 RNU6-700P-201ENST00000391043 107 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 MTND3P8-201ENST00000412909 339 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 AC074085.1-201ENST00000413598 418 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.27□□□□□ -2.21
ZNF560Q96MR9 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.27□□□□□ -2.21
ZNF560Q96MR9 RPS27P22-201ENST00000478056 241 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 AC105029.1-201ENST00000520250 669 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 MIR4781-201ENST00000585250 76 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 AC005014.2-201ENST00000607795 599 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 AC007014.2-201ENST00000615581 479 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 MIR8065-201ENST00000620577 100 ntBASIC1.27□□□□□ -2.21
ZNF560Q96MR9 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
ZNF560Q96MR9 RNU6-1264P-201ENST00000383891 107 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 RNU6-1145P-201ENST00000384246 107 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 RNU6-1050P-201ENST00000410388 107 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 MTCO3P19-201ENST00000415864 321 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 MTCYBP10-201ENST00000424905 650 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 AC015922.2-201ENST00000435593 184 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 UBE2V1P7-201ENST00000446395 340 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 RPL39P38-201ENST00000467018 153 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 AC010469.2-201ENST00000496412 480 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 AC090821.2-201ENST00000523552 176 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 AC125232.2-201ENST00000592457 143 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 AL133216.2-202ENST00000634512 349 ntBASIC1.26□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.2-201ENST00000362330 96 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 SNORA25.8-201ENST00000364831 128 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 RNU6-53P-201ENST00000365367 106 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 MTCYBP4-201ENST00000401524 249 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.594-201ENST00000410373 140 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 RNU6-1001P-201ENST00000411265 100 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.25□□□□□ -2.21
ZNF560Q96MR9 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.25□□□□□ -2.21
ZNF560Q96MR9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.25□□□□□ -2.21
ZNF560Q96MR9 AC074133.1-201ENST00000515696 183 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.25□□□□□ -2.21
ZNF560Q96MR9 AC023157.2-201ENST00000540596 141 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 AC073349.3-201ENST00000617616 186 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 AC091895.1-201ENST00000624494 256 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 AC091812.1-201ENST00000432235 1948 ntBASIC1.25□□□□□ -2.21
ZNF560Q96MR9 RNY1P16-201ENST00000363063 111 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.339-201ENST00000365325 102 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 SNORA12.1-201ENST00000390873 148 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 MIR548F5-201ENST00000408421 86 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 ELOCP21-201ENST00000412558 336 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 RPS3AP52-201ENST00000435639 297 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.24□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.670-201ENST00000516255 105 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 RN7SKP88-201ENST00000516847 250 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 Y_RNA.708-201ENST00000516950 96 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 AC019288.1-201ENST00000557918 224 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 SNORA28-201ENST00000606769 126 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 AL021879.1-201ENST00000611756 288 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 7SK.8-201ENST00000612110 250 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 7SK.11-201ENST00000615477 250 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 7SK.13-201ENST00000622040 250 ntBASIC1.24□□□□□ -2.21
ZNF560Q96MR9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
ZNF560Q96MR9 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.24□□□□□ -2.21
ZNF560Q96MR9 MIR410-201ENST00000362222 80 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms