Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC114982.1-201ENST00000469402 321 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-470P-201ENST00000515954 104 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-1153P-201ENST00000516760 105 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 RRN3P3-201ENST00000549207 578 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 AC015688.6-201ENST00000577737 104 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 MIR5690-201ENST00000583739 73 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 AC016727.2-201ENST00000603988 621 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 AL080274.1-201ENST00000605565 220 ntBASIC1.39□□□□□ -2.19
ZNF540Q8NDQ6 AC073544.1-201ENST00000600110 1595 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-222P-201ENST00000362438 107 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 RNY1P10-201ENST00000363268 113 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 SNORD115-8-201ENST00000363856 82 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 RNU4-76P-201ENST00000364509 141 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-99P-201ENST00000364721 107 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 RNU4-9P-201ENST00000364951 139 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 SNORD115-38-201ENST00000365037 82 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-1093P-201ENST00000391194 107 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AL078595.1-201ENST00000404458 226 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AL161935.2-201ENST00000414627 60 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AC018865.2-201ENST00000423631 129 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AC074290.1-201ENST00000448883 135 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AC007215.1-201ENST00000464893 276 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AL163195.1-201ENST00000496941 348 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AC105758.1-201ENST00000506038 399 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.661-201ENST00000516003 99 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-1041P-201ENST00000516254 102 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-699P-201ENST00000517081 110 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AC019176.1-201ENST00000518519 225 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AL590705.4-201ENST00000532209 134 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AL161670.1-201ENST00000554348 137 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 MIR4273-201ENST00000582824 84 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 AC080078.3-201ENST00000605407 463 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 uc_338.22-201ENST00000622722 187 ntBASIC1.38□□□□□ -2.19
ZNF540Q8NDQ6 MIR369-201ENST00000362155 70 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.112-201ENST00000363250 102 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 RNY3P11-201ENST00000364153 102 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 MIR548B-201ENST00000385247 97 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 SNORA67.6-201ENST00000391093 99 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 RNA5SP504-201ENST00000410676 117 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 MTCO2P27-201ENST00000420740 428 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 PMCHL1-202ENST00000423102 261 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 AL445305.1-201ENST00000432577 575 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 HMGN2P9-201ENST00000476875 229 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 RPL17P19-201ENST00000489069 552 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 AC011406.1-201ENST00000512440 370 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 AC019288.1-201ENST00000557918 224 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 AC020661.2-201ENST00000560114 134 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 UBL5P4-201ENST00000562584 236 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 BX248123.2-201ENST00000606318 124 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 MIR1244-1-201ENST00000612829 85 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 PISRT1.1-201ENST00000616930 107 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 MIR1244-3-201ENST00000635744 85 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 MIR1244-2-201ENST00000636449 85 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 MIR1244-4-202ENST00000636813 85 ntBASIC1.37□□□□□ -2.19
ZNF540Q8NDQ6 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.197-201ENST00000364004 102 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.216-201ENST00000364205 93 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.252-201ENST00000364556 101 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.460-201ENST00000384255 102 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 MIR32-201ENST00000384965 70 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 MIR10B-201ENST00000385011 110 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 MIR618-201ENST00000385287 98 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-308P-201ENST00000390957 107 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 SNORA17.3-201ENST00000391159 129 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 MIR1283-1-201ENST00000408494 87 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AP1B1P2-201ENST00000416196 106 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 SNX2P2-201ENST00000424553 323 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC236972.2-201ENST00000434979 310 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC009474.2-201ENST00000451383 136 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AP000870.1-201ENST00000472927 406 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-1146P-201ENST00000516282 102 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-948P-201ENST00000516374 107 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.701-201ENST00000516812 110 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-58P-201ENST00000517143 103 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AK6P2-201ENST00000549020 471 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 DNAJC19P9-201ENST00000555084 351 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC004584.2-201ENST00000570407 410 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC005899.2-201ENST00000584353 90 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC125232.2-201ENST00000592457 143 ntBASIC1.36□□□□□ -2.19
ZNF540Q8NDQ6 AC090574.1-201ENST00000623186 233 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 152.9 ms