Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC006600.1-201ENST00000572529 153 ntBASIC-1.49□□□□□ -2.65
LINC00643Q86TS7 MIR4677-201ENST00000584153 80 ntBASIC-1.49□□□□□ -2.65
LINC00643Q86TS7 OR4H6P-202ENST00000603819 340 ntBASIC-1.49□□□□□ -2.65
LINC00643Q86TS7 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-1.49□□□□□ -2.65
LINC00643Q86TS7 MIR215-201ENST00000384858 110 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 SNAP23P1-201ENST00000433229 246 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 ZNF114P1-201ENST00000453500 292 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 PRDX4P1-201ENST00000507189 574 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 RNY4P37-201ENST00000516225 96 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 RNA5SP66-201ENST00000517178 101 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 MIR4264-201ENST00000583520 66 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 MIR6507-201ENST00000613630 70 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 AC134878.1-201ENST00000619901 243 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 AP002782.1-201ENST00000623107 614 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 AC008873.1-201ENST00000625051 138 ntBASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC-1.5□□□□□ -2.65
LINC00643Q86TS7 MTCO3P8-201ENST00000453691 755 ntBASIC-1.51□□□□□ -2.65
LINC00643Q86TS7 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC-1.51□□□□□ -2.65
LINC00643Q86TS7 SNORA18.4-201ENST00000516440 124 ntBASIC-1.51□□□□□ -2.65
LINC00643Q86TS7 RNA5SP285-201ENST00000516619 119 ntBASIC-1.51□□□□□ -2.65
LINC00643Q86TS7 FRG2DP-202ENST00000566967 323 ntBASIC-1.51□□□□□ -2.65
LINC00643Q86TS7 MIR5706-201ENST00000579841 80 ntBASIC-1.51□□□□□ -2.65
LINC00643Q86TS7 MIR378D2-201ENST00000580636 98 ntBASIC-1.51□□□□□ -2.65
LINC00643Q86TS7 Y_RNA.115-201ENST00000363272 98 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 Y_RNA.116-201ENST00000363292 103 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 RNU5A-6P-201ENST00000384136 116 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 TRIM60P10Y-201ENST00000425589 751 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 SPINT5P-201ENST00000448174 155 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 AC074198.2-201ENST00000508153 258 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 AC063944.3-201ENST00000609969 533 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 TUG1_4.1-201ENST00000619464 181 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 SNORA43.4-201ENST00000629559 138 ntBASIC-1.52□□□□□ -2.65
LINC00643Q86TS7 RNU6-1266P-201ENST00000362794 105 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 RNU6-511P-201ENST00000363496 107 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 MTATP6P26-201ENST00000445926 662 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 SEPT14P24-201ENST00000447236 180 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 MRPS10P1-201ENST00000448483 130 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 RNU6-1037P-201ENST00000459571 107 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 ADI1P3-201ENST00000549509 470 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 AC121247.2-201ENST00000604776 136 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-1.53□□□□□ -2.65
LINC00643Q86TS7 RNU6-428P-201ENST00000362942 107 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 RNU6-371P-201ENST00000364283 108 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 MIR604-201ENST00000384880 94 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 AC108729.2-201ENST00000476543 840 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 RNU6-135P-201ENST00000516769 101 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 RNU6-430P-201ENST00000517078 107 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 MTND1P8-201ENST00000571424 950 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 FGF7P1-201ENST00000582820 288 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 AC099785.1-201ENST00000605697 437 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 AC144521.1-201ENST00000607148 956 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 AC012467.1-201ENST00000607740 256 ntBASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-1.54□□□□□ -2.66
LINC00643Q86TS7 RNA5SP98-201ENST00000363158 137 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AC117470.1-201ENST00000381974 330 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 MIR329-1-201ENST00000385028 80 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 MIR1257-201ENST00000408490 117 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 RNU4-63P-201ENST00000411313 118 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AL117339.3-201ENST00000418733 162 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AL953862.1-201ENST00000423016 168 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 BTBD7P2-201ENST00000441962 620 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 snoU13.6-201ENST00000458785 104 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 SCARNA18-201ENST00000459004 134 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AC005178.1-201ENST00000508392 440 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AC090572.1-201ENST00000519251 160 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AP001328.1-201ENST00000528550 176 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AC104072.1-201ENST00000568817 668 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 MIR5692A1-201ENST00000580523 69 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AC091178.2-201ENST00000584401 117 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 BNIP3P26-201ENST00000600827 554 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 AC072039.2-201ENST00000608883 439 ntBASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 UGP2-231ENST00000627474 264 ntTSL 5 BASIC-1.55□□□□□ -2.66
LINC00643Q86TS7 Y_RNA.100-201ENST00000363141 102 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 RNY3P13-201ENST00000365542 102 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 RNU6-47P-201ENST00000383866 107 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 RNU6-25P-201ENST00000383873 107 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 RNU6-48P-201ENST00000384161 107 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 RNU6-15P-201ENST00000384534 107 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 RNU6-29P-201ENST00000384637 107 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 AC114491.1-201ENST00000416095 246 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 RNU7-62P-201ENST00000458856 62 ntBASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.56□□□□□ -2.66
LINC00643Q86TS7 AP000907.4-201ENST00000604143 237 ntBASIC-1.56□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms