Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIR3688-2-201ENST00000636963 87 ntBASIC1.22□□□□□ -2.21
CCDC40Q4G0X9 Y_RNA.106-201ENST00000363189 100 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 SNORD115-47-201ENST00000391226 86 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 RNU7-94P-201ENST00000459576 63 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC010469.2-201ENST00000496412 480 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC093023.1-201ENST00000547375 507 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC016727.1-205ENST00000605437 569 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC093913.1-201ENST00000614178 329 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AL513423.1-201ENST00000621695 132 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC006435.5-201ENST00000624486 112 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC068647.2-201ENST00000637380 353 ntBASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CCDC40Q4G0X9 AC018630.2-201ENST00000534866 2403 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 AL139396.1-201ENST00000421137 167 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 MRPL35P3-201ENST00000421557 364 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 RPS29P28-201ENST00000446439 141 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 AC092991.1-201ENST00000477176 376 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 AC010598.1-201ENST00000510378 103 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 RNU6-165P-201ENST00000517170 99 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 AC093783.1-201ENST00000612976 329 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 AC073349.3-201ENST00000617616 186 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 SNORD3E-202ENST00000627253 216 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 MTND5P16-201ENST00000460269 1703 ntBASIC1.2□□□□□ -2.22
CCDC40Q4G0X9 Y_RNA.327-201ENST00000365201 102 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 SNORA22-201ENST00000383907 134 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 RNU6-505P-201ENST00000384427 107 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 SNORA22C-201ENST00000384614 134 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 SNORD116-4-201ENST00000384733 96 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 RNU6-1001P-201ENST00000411265 100 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 AC092989.1-201ENST00000481235 277 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 MTND5P5-201ENST00000503764 376 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 Y_RNA.682-201ENST00000516457 100 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 MIR5701-3-201ENST00000578890 82 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 MIR5701-1-201ENST00000585138 82 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 AL162424.1-201ENST00000602325 221 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 AL359821.1-201ENST00000605519 182 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 AC090517.2-201ENST00000614966 680 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 MIR5701-2-201ENST00000615634 82 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.19□□□□□ -2.22
CCDC40Q4G0X9 SNORA70.7-201ENST00000384159 133 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 Y_RNA.473-201ENST00000384333 102 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 MIR660-201ENST00000385235 97 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 STAG3L5P-204ENST00000443759 179 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 AC046134.1-201ENST00000514454 666 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 RNA5SP404-201ENST00000517118 132 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 AL121579.1-201ENST00000555129 305 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 AC090617.3-201ENST00000573670 475 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 AC125232.2-201ENST00000592457 143 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 AC106754.2-201ENST00000623006 233 ntBASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC40Q4G0X9 RNU6-1215P-201ENST00000384441 102 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 MIR329-1-201ENST00000385028 80 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 MIR190B-201ENST00000401119 79 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AL355796.1-201ENST00000406706 323 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 EIF1P2-201ENST00000428233 350 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AC092473.1-201ENST00000441098 221 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 RNU6-329P-201ENST00000459618 107 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AC026782.1-201ENST00000512952 449 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AC097462.1-201ENST00000514125 324 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 RNU6-1053P-201ENST00000515930 101 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AC018462.2-201ENST00000605375 395 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AC005014.2-201ENST00000607795 599 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 AC091895.1-201ENST00000624494 256 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 MIR6079-201ENST00000635807 62 ntBASIC1.17□□□□□ -2.22
CCDC40Q4G0X9 RNU1-22P-201ENST00000363334 158 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 SNORA20B-201ENST00000384220 132 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 MIR548F1-201ENST00000408667 84 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 MTCO3P19-201ENST00000415864 321 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 DYNLT3P2-201ENST00000442517 295 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 AC005840.1-201ENST00000498412 377 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 AC018710.1-201ENST00000506509 158 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 TRMT112P2-201ENST00000512910 132 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 RNU7-172P-201ENST00000517125 64 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 MIR4778-201ENST00000577635 80 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 AC018638.8-201ENST00000588755 281 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 AL133216.2-202ENST00000634512 349 ntBASIC1.16□□□□□ -2.22
CCDC40Q4G0X9 RNU4-76P-201ENST00000364509 141 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 RNU6-1264P-201ENST00000383891 107 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 SNORA25-201ENST00000384384 134 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 RNU6-321P-201ENST00000410912 106 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 ELOCP21-201ENST00000412558 336 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 UQCRBP2-201ENST00000447827 297 ntBASIC1.15□□□□□ -2.23
CCDC40Q4G0X9 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms