Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC007671.2-201ENST00000637344 619 ntBASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 RNY4P34-201ENST00000364779 95 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-456P-201ENST00000384493 107 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 SNORD105-201ENST00000386910 85 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 ZNF114P1-201ENST00000453500 292 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 SNORD11.1-201ENST00000459482 85 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 RNU4-77P-201ENST00000516692 156 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-1096P-201ENST00000517089 102 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 MIR5696-201ENST00000578474 85 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 AC064836.2-201ENST00000609491 462 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 RMST_3.1-201ENST00000611651 109 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 Y_RNA.124-201ENST00000363339 93 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 Y_RNA.560-201ENST00000384689 102 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 SNORA40.3-201ENST00000390964 122 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 AC016909.1-201ENST00000415916 166 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 AC091021.1-201ENST00000468051 388 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 AF235103.2-201ENST00000525753 346 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 AL137161.1-201ENST00000532231 390 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 SCARNA4-201ENST00000629045 128 ntBASIC0.18□□□□□ -2.38
CCDC88AQ3V6T2 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 Y_RNA.336-201ENST00000365307 109 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 RNA5SP494-201ENST00000410653 129 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 MTCO2P8-201ENST00000412213 658 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 SSR1P2-201ENST00000415208 787 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AC008134.1-201ENST00000420943 193 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AL162725.1-201ENST00000435405 301 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AC010469.2-201ENST00000496412 480 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AC074133.1-201ENST00000515696 183 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 SNORA25.14-201ENST00000516481 132 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AC104383.1-201ENST00000530297 370 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AP002963.1-201ENST00000530590 184 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 AC079248.2-201ENST00000623779 326 ntBASIC0.17□□□□□ -2.38
CCDC88AQ3V6T2 Y_RNA.265-201ENST00000364677 108 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 RNA5SP331-201ENST00000364986 107 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-1335P-201ENST00000365426 107 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 USP9YP12-201ENST00000450481 570 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AC104692.1-201ENST00000472406 90 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AC022493.2-201ENST00000506122 481 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 RPL39P5-202ENST00000512505 151 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 HIF1AP1-201ENST00000553642 175 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AGGF1P4-201ENST00000568249 801 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AL117336.2-201ENST00000602435 335 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 MIR329-1-201ENST00000385028 80 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 PCNPP5-201ENST00000452246 481 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 RNA5SP134-201ENST00000516492 96 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AC027419.1-201ENST00000522976 328 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AL022161.1-201ENST00000604390 213 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AC009248.2-201ENST00000619826 254 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 AF246928.1-201ENST00000623768 87 ntBASIC0.16□□□□□ -2.38
CCDC88AQ3V6T2 RNA5SP264-201ENST00000363115 107 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 MIR526A1-201ENST00000384897 85 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-189P-201ENST00000516120 101 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 RNU7-43P-201ENST00000516554 64 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 RNU2-46P-201ENST00000517038 113 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 AP002004.2-201ENST00000531656 154 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 AC026371.1-201ENST00000551867 419 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 CPDP1-201ENST00000579660 283 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 AL355073.2-201ENST00000612106 557 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 AC072046.2-201ENST00000618366 268 ntBASIC0.15□□□□□ -2.39
CCDC88AQ3V6T2 RNU5F-7P-201ENST00000363696 115 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-945P-201ENST00000383947 107 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 MIR620-201ENST00000385232 95 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 MT-TN-201ENST00000387400 73 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 RNU7-128P-201ENST00000517247 62 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 MTND1P5-201ENST00000517906 940 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 MIR4764-201ENST00000580680 88 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 AC090616.2-202ENST00000584248 222 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 MIR4762-201ENST00000585261 75 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 RNA5SP368-201ENST00000364298 116 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 MTCYBP4-201ENST00000401524 249 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 CETN4P-201ENST00000432407 469 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 AL133217.1-201ENST00000450980 425 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 AC067940.1-201ENST00000458411 300 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 Y_RNA.654-201ENST00000497848 106 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-612P-201ENST00000516909 102 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 257.7 ms