Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC090572.1-201ENST00000519251 160 ntBASIC-0.26□□□□□ -2.45
CHD9Q3L8U1 AC040926.1-201ENST00000530195 238 ntBASIC-0.26□□□□□ -2.45
CHD9Q3L8U1 AC245297.2-201ENST00000610119 565 ntBASIC-0.26□□□□□ -2.45
CHD9Q3L8U1 uc_338.11-201ENST00000619132 160 ntBASIC-0.26□□□□□ -2.45
CHD9Q3L8U1 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.26□□□□□ -2.45
CHD9Q3L8U1 AC073343.1-201ENST00000328239 651 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU6-560P-201ENST00000364007 108 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 SNORA24.1-201ENST00000384401 135 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 MIR586-201ENST00000385035 97 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU6-269P-201ENST00000391077 97 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC137499.1-201ENST00000427602 88 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 MTCYBP42-201ENST00000444653 1130 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU6-221P-201ENST00000459541 99 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 SNRPGP7-201ENST00000469016 106 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU2-60P-201ENST00000517290 128 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 TCL6_2.1-201ENST00000615162 119 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC015726.2-201ENST00000620112 122 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC098679.4-201ENST00000624241 654 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 MIR1246-201ENST00000636535 73 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 ZNF204P-201ENST00000416749 2397 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNA5SP192-201ENST00000364404 120 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU6-245P-201ENST00000384020 107 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 MTCO2P33-201ENST00000402100 465 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 ELOCP21-201ENST00000412558 336 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AL590632.1-201ENST00000424289 371 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 MTCO1P20-201ENST00000425366 358 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU7-43P-201ENST00000516554 64 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU6-58P-201ENST00000517143 103 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC012433.1-201ENST00000588916 398 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC139792.3-201ENST00000623525 224 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 MPP6-209ENST00000625307 126 ntTSL 5 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU6-679P-201ENST00000391003 106 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 CALM2P2-201ENST00000428512 440 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU6-977P-201ENST00000516411 103 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 RNU7-51P-201ENST00000516560 62 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 SNORA25.18-201ENST00000607153 114 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 MIR3666-201ENST00000607845 111 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 AC124016.2-201ENST00000610058 665 ntBASIC-0.27□□□□□ -2.45
CHD9Q3L8U1 MTND4P4-201ENST00000439033 1366 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 MTND4P9-201ENST00000507819 1346 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 Y_RNA.53-201ENST00000362765 102 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 MIR548L-201ENST00000408303 86 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 MIR1302-7-201ENST00000408841 72 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 ZNF885P-201ENST00000420174 1098 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC012306.1-201ENST00000423267 114 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC093303.1-201ENST00000514549 295 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 RNU2-46P-201ENST00000517038 113 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 RNU7-128P-201ENST00000517247 62 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC120024.3-201ENST00000603167 156 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AL096861.1-201ENST00000610899 123 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC137590.2-201ENST00000619709 240 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AP000542.1-201ENST00000448473 371 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 RPL39P25-201ENST00000449384 154 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AL049829.1-201ENST00000465411 156 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC105417.1-201ENST00000514691 285 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC105029.1-201ENST00000520250 669 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC023157.2-201ENST00000540596 141 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC123904.2-201ENST00000548059 300 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC023827.1-201ENST00000569247 97 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 MIR544B-201ENST00000582372 78 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC008521.1-201ENST00000587471 187 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AC009994.1-201ENST00000606889 253 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 AL136221.1-201ENST00000621449 509 ntBASIC-0.28□□□□□ -2.45
CHD9Q3L8U1 SNORD114-11-201ENST00000363738 75 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 RNU4-16P-201ENST00000364737 141 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 RNU6-384P-201ENST00000364900 104 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 RNU6-1286P-201ENST00000383871 107 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 MT-TN-201ENST00000387400 73 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 SNORA40.2-201ENST00000390847 128 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 BTBD7P2-201ENST00000441962 620 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 MTCO3P27-201ENST00000514397 196 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 SNORD27.1-201ENST00000516319 72 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AC087883.1-201ENST00000551882 391 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 SNORA28-201ENST00000606769 126 ntBASIC-0.29□□□□□ -2.46
CHD9Q3L8U1 AC099786.3-201ENST00000565735 1410 ntBASIC-0.29□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 600.2 ms