Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC022432.1-201ENST00000595739 310 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 AC124303.1-201ENST00000605703 360 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 AC019193.3-201ENST00000609144 554 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.72□□□□□ -2.29
FOXA1P55317 RNU6-1266P-201ENST00000362794 105 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 Y_RNA.212-201ENST00000364177 102 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 RNU6-793P-201ENST00000384233 104 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 RNU6-17P-201ENST00000384245 107 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 SNORD116-2-201ENST00000384274 95 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 RNU6-18P-201ENST00000384527 107 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 SNORD116-6-201ENST00000384711 96 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 MIR598-201ENST00000384868 97 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.71□□□□□ -2.3
FOXA1P55317 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXA1P55317 MTATP6P13-201ENST00000438531 667 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 AC092991.1-201ENST00000477176 376 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.71□□□□□ -2.3
FOXA1P55317 RNU7-99P-201ENST00000516271 62 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 AC004584.2-201ENST00000570407 410 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 AC136932.1-201ENST00000574771 208 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 MIR5000-201ENST00000577717 103 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 MIR5695-201ENST00000579717 85 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 AL021879.1-201ENST00000611756 288 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 MIR1321-201ENST00000637766 79 ntBASIC0.71□□□□□ -2.3
FOXA1P55317 HSBP1P2-201ENST00000299671 229 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
FOXA1P55317 RNU6-1090P-201ENST00000364065 94 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 RNU6-280P-201ENST00000364145 104 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 SNORD116-11-201ENST00000383882 92 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 Y_RNA.414-201ENST00000384011 101 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 SNORA25-201ENST00000384384 134 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 RNU6-505P-201ENST00000384427 107 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 RNU6-342P-201ENST00000384521 104 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 RNU6-306P-201ENST00000384617 107 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 Y_RNA.559-201ENST00000384686 107 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AC243428.1-201ENST00000421099 264 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.7□□□□□ -2.3
FOXA1P55317 MTND4P18-201ENST00000447010 465 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 SNORD65B-201ENST00000459126 73 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AP000870.1-201ENST00000472927 406 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXA1P55317 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.7□□□□□ -2.3
FOXA1P55317 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXA1P55317 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXA1P55317 DEFB108E-201ENST00000524692 240 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 CYP3A137P-201ENST00000562436 69 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.7□□□□□ -2.3
FOXA1P55317 MIR5696-201ENST00000578474 85 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 MIR4653-201ENST00000585107 83 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AL022345.2-201ENST00000606307 135 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 BX284668.6-201ENST00000606899 438 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AC103591.3-201ENST00000608684 209 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AL513423.1-201ENST00000621695 132 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AC106754.2-201ENST00000623006 233 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AC027335.2-201ENST00000624030 375 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.7□□□□□ -2.3
FOXA1P55317 MIR6866-201ENST00000638146 69 ntBASIC0.7□□□□□ -2.3
FOXA1P55317 Y_RNA.41-201ENST00000362646 102 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 Y_RNA.100-201ENST00000363141 102 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 Y_RNA.179-201ENST00000363844 90 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 Y_RNA.533-201ENST00000384596 114 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 MIR10B-201ENST00000385011 110 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AL034345.1-201ENST00000407768 123 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.69□□□□□ -2.3
FOXA1P55317 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.69□□□□□ -2.3
FOXA1P55317 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.69□□□□□ -2.3
FOXA1P55317 AC093303.1-201ENST00000514549 295 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 RNU6-506P-201ENST00000516553 94 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 RNU6-314P-201ENST00000516574 104 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 RN7SKP49-201ENST00000516675 260 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 RNU6-922P-201ENST00000516753 99 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AC091144.1-201ENST00000519573 138 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AC027419.1-201ENST00000522976 328 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AC134698.4-201ENST00000523451 826 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 MIR3942-201ENST00000585264 109 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 MIR4438-201ENST00000585271 93 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AF250324.2-201ENST00000608299 610 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AC106800.4-201ENST00000614905 153 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.69□□□□□ -2.3
FOXA1P55317 SNORD3E-202ENST00000627253 216 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AC024614.3-201ENST00000637860 256 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 AC018630.2-201ENST00000534866 2403 ntBASIC0.69□□□□□ -2.3
FOXA1P55317 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
FOXA1P55317 SNORD114-26-201ENST00000363543 72 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 MIR660-201ENST00000385235 97 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
FOXA1P55317 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
FOXA1P55317 SNORD116-28-201ENST00000516123 91 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 CYCSP23-201ENST00000519781 313 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 APOOP3-201ENST00000536787 586 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
FOXA1P55317 AC023157.2-201ENST00000540596 141 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 7SK.7-201ENST00000603504 247 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 AC010999.1-201ENST00000611856 324 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 AC073349.3-201ENST00000617616 186 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 AC090617.10-201ENST00000624308 134 ntBASIC0.68□□□□□ -2.3
FOXA1P55317 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.67□□□□□ -2.3
FOXA1P55317 RNU5F-3P-201ENST00000363767 117 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 RNU1-124P-201ENST00000363861 145 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms