Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU2-54P-201ENST00000410299 190 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 RNU2-52P-201ENST00000410680 190 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXA1P49639 SRIP3-201ENST00000413200 219 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 EDDM3CP-201ENST00000415977 425 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 AC060773.1-201ENST00000421698 310 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 BX510359.4-201ENST00000423750 193 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXA1P49639 RNU6-221P-201ENST00000459541 99 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 AC114982.1-201ENST00000469402 321 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 RNU6-948P-201ENST00000516374 107 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 Y_RNA.680-201ENST00000516441 93 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXA1P49639 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXA1P49639 RPL21P9-201ENST00000556149 474 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 MIR3126-201ENST00000577443 74 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 AL031274.2-201ENST00000599419 203 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 AC010900.2-201ENST00000604508 210 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 SNORD113-5-201ENST00000607261 78 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXA1P49639 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXA1P49639 U6.115-201ENST00000636045 103 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.89□□□□□ -2.11
HOXA1P49639 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.89□□□□□ -2.11
HOXA1P49639 SNORA5B-201ENST00000363786 132 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 SNORA80A-201ENST00000363922 136 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 SNORD115-30-201ENST00000364117 82 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 RNU6-702P-201ENST00000364982 107 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 Y_RNA.477-201ENST00000384352 108 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AL031003.1-201ENST00000404229 172 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 NDUFB4P10-201ENST00000452541 359 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AC005042.3-201ENST00000453230 174 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXA1P49639 SEPT14P8-201ENST00000508026 178 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 RN7SKP132-201ENST00000516001 208 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 RNU6-436P-201ENST00000516171 114 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 Y_RNA.668-201ENST00000516233 93 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 RNU6-1041P-201ENST00000516254 102 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AC025647.1-201ENST00000517879 253 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AP005660.1-201ENST00000522972 293 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AC021269.2-201ENST00000532318 330 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 EIF4BP1-201ENST00000554881 351 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AC012433.1-201ENST00000588916 398 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AC006386.2-201ENST00000624491 75 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 AC012005.1-201ENST00000624575 75 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 MIR1291-201ENST00000627649 87 ntBASIC1.89□□□□□ -2.11
HOXA1P49639 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.89□□□□□ -2.11
HOXA1P49639 RNU4-90P-201ENST00000362773 141 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 RNU4-80P-201ENST00000363200 141 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 RNU6-290P-201ENST00000365212 101 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 RNU6-1310P-201ENST00000384153 107 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 RNU6-1235P-201ENST00000384559 107 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 MIR597-201ENST00000384968 97 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 AL359511.1-201ENST00000402970 211 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 POLR2KP2-201ENST00000438155 177 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 SNORD65B-201ENST00000459126 73 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 RNU6-498P-201ENST00000459468 107 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC1.88□□□□□ -2.11
HOXA1P49639 RN7SL274P-201ENST00000492268 272 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.88□□□□□ -2.11
HOXA1P49639 RNU6-1338P-201ENST00000516328 91 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 RNU1-40P-201ENST00000516816 164 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 RNU1-97P-201ENST00000516872 164 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 AC023157.2-201ENST00000540596 141 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXA1P49639 AC006380.1-201ENST00000603598 186 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 AL159152.1-201ENST00000635019 2587 ntBASIC1.88□□□□□ -2.11
HOXA1P49639 Y_RNA.99-201ENST00000363138 105 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 SNORA33-201ENST00000363664 130 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 RNA5SP493-201ENST00000364115 91 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 SNORA16B-201ENST00000364674 135 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 Y_RNA.288-201ENST00000364854 92 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 Y_RNA.307-201ENST00000365022 117 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 SNORA20B-201ENST00000384220 132 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 Y_RNA.569-201ENST00000384749 103 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
HOXA1P49639 RPL23AP36-201ENST00000413895 458 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 AC096920.1-201ENST00000423991 241 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 AL121890.1-201ENST00000435457 205 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 AL357134.1-201ENST00000445848 426 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 AC074290.1-201ENST00000448883 135 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXA1P49639 SNORD127-201ENST00000458892 86 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HOXA1P49639 AC026436.1-201ENST00000510537 270 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 MTND1P19-201ENST00000511780 315 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 RNA5SP356-201ENST00000515972 94 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 RNU6-856P-201ENST00000516959 98 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.87□□□□□ -2.11
HOXA1P49639 MTND5P6-201ENST00000422338 1798 ntBASIC1.87□□□□□ -2.11
HOXA1P49639 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
HOXA1P49639 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
HOXA1P49639 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
HOXA1P49639 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
HOXA1P49639 AL391987.6-201ENST00000305671 199 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 AC062016.1-201ENST00000355719 319 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 Y_RNA.172-201ENST00000363765 102 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 Y_RNA.243-201ENST00000364481 109 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 RNU6-407P-201ENST00000365280 104 ntBASIC1.86□□□□□ -2.11
HOXA1P49639 RNU6-417P-201ENST00000384712 107 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms