Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SNORA40.9-201ENST00000515895 93 ntBASIC1.69□□□□□ -2.14
LHX1P48742 Y_RNA.675-201ENST00000516389 149 ntBASIC1.69□□□□□ -2.14
LHX1P48742 GNAI2P1-201ENST00000541815 315 ntBASIC1.69□□□□□ -2.14
LHX1P48742 MIR3122-201ENST00000577243 73 ntBASIC1.69□□□□□ -2.14
LHX1P48742 MIR4795-201ENST00000584182 89 ntBASIC1.69□□□□□ -2.14
LHX1P48742 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.69□□□□□ -2.14
LHX1P48742 AP000942.3-201ENST00000603702 160 ntBASIC1.69□□□□□ -2.14
LHX1P48742 LARP7P1-201ENST00000605576 316 ntBASIC1.69□□□□□ -2.14
LHX1P48742 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.69□□□□□ -2.14
LHX1P48742 RNY3P11-201ENST00000364153 102 ntBASIC1.68□□□□□ -2.14
LHX1P48742 MIR628-201ENST00000385229 95 ntBASIC1.68□□□□□ -2.14
LHX1P48742 RNA5SP323-201ENST00000391094 133 ntBASIC1.68□□□□□ -2.14
LHX1P48742 SNORA17.3-201ENST00000391159 129 ntBASIC1.68□□□□□ -2.14
LHX1P48742 RNA5SP467-201ENST00000391274 118 ntBASIC1.68□□□□□ -2.14
LHX1P48742 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.68□□□□□ -2.14
LHX1P48742 RNU6-625P-201ENST00000459412 107 ntBASIC1.68□□□□□ -2.14
LHX1P48742 AC018448.1-201ENST00000552843 316 ntBASIC1.68□□□□□ -2.14
LHX1P48742 AC022432.1-201ENST00000595739 310 ntBASIC1.68□□□□□ -2.14
LHX1P48742 AC103810.8-201ENST00000607347 118 ntBASIC1.68□□□□□ -2.14
LHX1P48742 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.68□□□□□ -2.14
LHX1P48742 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
LHX1P48742 Y_RNA.428-201ENST00000384078 102 ntBASIC1.67□□□□□ -2.14
LHX1P48742 Y_RNA.463-201ENST00000384271 102 ntBASIC1.67□□□□□ -2.14
LHX1P48742 MIR517C-201ENST00000385103 95 ntBASIC1.67□□□□□ -2.14
LHX1P48742 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.67□□□□□ -2.14
LHX1P48742 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.67□□□□□ -2.14
LHX1P48742 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.67□□□□□ -2.14
LHX1P48742 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.67□□□□□ -2.14
LHX1P48742 RNA5SP458-201ENST00000516188 119 ntBASIC1.67□□□□□ -2.14
LHX1P48742 RNA5SP437-201ENST00000517249 129 ntBASIC1.67□□□□□ -2.14
LHX1P48742 AC024995.1-201ENST00000523014 93 ntBASIC1.67□□□□□ -2.14
LHX1P48742 AL137100.2-201ENST00000555786 315 ntBASIC1.67□□□□□ -2.14
LHX1P48742 BX248123.2-201ENST00000606318 124 ntBASIC1.67□□□□□ -2.14
LHX1P48742 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.67□□□□□ -2.14
LHX1P48742 U2.1-201ENST00000618978 145 ntBASIC1.67□□□□□ -2.14
LHX1P48742 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.66□□□□□ -2.14
LHX1P48742 SNORA63D-201ENST00000364359 132 ntBASIC1.66□□□□□ -2.14
LHX1P48742 AC022028.1-201ENST00000412054 408 ntBASIC1.66□□□□□ -2.14
LHX1P48742 AC108667.1-201ENST00000428618 249 ntBASIC1.66□□□□□ -2.14
LHX1P48742 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.66□□□□□ -2.14
LHX1P48742 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.66□□□□□ -2.14
LHX1P48742 AC112492.4-201ENST00000456549 352 ntBASIC1.66□□□□□ -2.14
LHX1P48742 HMGN1P13-201ENST00000505795 138 ntBASIC1.66□□□□□ -2.14
LHX1P48742 RNU1-142P-201ENST00000516682 145 ntBASIC1.66□□□□□ -2.14
LHX1P48742 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.66□□□□□ -2.14
LHX1P48742 RAB11AP2-201ENST00000545905 639 ntBASIC1.66□□□□□ -2.14
LHX1P48742 AL359075.3-201ENST00000613288 217 ntBASIC1.66□□□□□ -2.14
LHX1P48742 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
LHX1P48742 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
LHX1P48742 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
LHX1P48742 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.65□□□□□ -2.14
LHX1P48742 RNU6-661P-201ENST00000362409 107 ntBASIC1.65□□□□□ -2.15
LHX1P48742 RNU6-1115P-201ENST00000362490 106 ntBASIC1.65□□□□□ -2.15
LHX1P48742 RNU4-79P-201ENST00000362764 141 ntBASIC1.65□□□□□ -2.15
LHX1P48742 Y_RNA.140-201ENST00000363474 103 ntBASIC1.65□□□□□ -2.15
LHX1P48742 RNU4-42P-201ENST00000364738 142 ntBASIC1.65□□□□□ -2.15
LHX1P48742 RNU6-60P-201ENST00000364792 103 ntBASIC1.65□□□□□ -2.15
LHX1P48742 RNU6-439P-201ENST00000384188 106 ntBASIC1.65□□□□□ -2.15
LHX1P48742 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.65□□□□□ -2.15
LHX1P48742 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.65□□□□□ -2.15
LHX1P48742 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.65□□□□□ -2.15
LHX1P48742 AF228730.4-201ENST00000421457 183 ntBASIC1.65□□□□□ -2.15
LHX1P48742 RAB28P5-201ENST00000427490 651 ntBASIC1.65□□□□□ -2.15
LHX1P48742 HSPE1P9-201ENST00000440046 311 ntBASIC1.65□□□□□ -2.15
LHX1P48742 SNORD65B-201ENST00000459126 73 ntBASIC1.65□□□□□ -2.15
LHX1P48742 RPL36AP21-201ENST00000490372 323 ntBASIC1.65□□□□□ -2.15
LHX1P48742 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
LHX1P48742 RNA5SP481-201ENST00000516814 122 ntBASIC1.65□□□□□ -2.15
LHX1P48742 SNORA44.1-201ENST00000517031 108 ntBASIC1.65□□□□□ -2.15
LHX1P48742 SNORD116.3-201ENST00000517176 78 ntBASIC1.65□□□□□ -2.15
LHX1P48742 AC027419.1-201ENST00000522976 328 ntBASIC1.65□□□□□ -2.15
LHX1P48742 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.65□□□□□ -2.15
LHX1P48742 AL442163.3-201ENST00000554110 156 ntBASIC1.65□□□□□ -2.15
LHX1P48742 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.65□□□□□ -2.15
LHX1P48742 MIR3674-201ENST00000636576 68 ntBASIC1.65□□□□□ -2.15
LHX1P48742 MIR410-201ENST00000362222 80 ntBASIC1.64□□□□□ -2.15
LHX1P48742 RNY3P4-201ENST00000384428 101 ntBASIC1.64□□□□□ -2.15
LHX1P48742 SNORA67.6-201ENST00000391093 99 ntBASIC1.64□□□□□ -2.15
LHX1P48742 RNU6-1186P-201ENST00000410429 97 ntBASIC1.64□□□□□ -2.15
LHX1P48742 RNA5SP475-201ENST00000410568 110 ntBASIC1.64□□□□□ -2.15
LHX1P48742 AC096644.2-201ENST00000429278 159 ntBASIC1.64□□□□□ -2.15
LHX1P48742 AC073910.1-201ENST00000445047 438 ntBASIC1.64□□□□□ -2.15
LHX1P48742 AL163195.1-201ENST00000496941 348 ntBASIC1.64□□□□□ -2.15
LHX1P48742 AC010598.1-201ENST00000510378 103 ntBASIC1.64□□□□□ -2.15
LHX1P48742 AC025465.3-201ENST00000510570 311 ntBASIC1.64□□□□□ -2.15
LHX1P48742 RNU6-911P-201ENST00000516523 104 ntBASIC1.64□□□□□ -2.15
LHX1P48742 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.64□□□□□ -2.15
LHX1P48742 MIR3684-201ENST00000579779 74 ntBASIC1.64□□□□□ -2.15
LHX1P48742 MIR4303-201ENST00000581299 66 ntBASIC1.64□□□□□ -2.15
LHX1P48742 AL117336.2-201ENST00000602435 335 ntBASIC1.64□□□□□ -2.15
LHX1P48742 AC006435.5-201ENST00000624486 112 ntBASIC1.64□□□□□ -2.15
LHX1P48742 RNU6-414P-201ENST00000363705 104 ntBASIC1.63□□□□□ -2.15
LHX1P48742 RNU5E-4P-201ENST00000364931 120 ntBASIC1.63□□□□□ -2.15
LHX1P48742 RNU6-867P-201ENST00000364956 107 ntBASIC1.63□□□□□ -2.15
LHX1P48742 RNU6-926P-201ENST00000384075 107 ntBASIC1.63□□□□□ -2.15
LHX1P48742 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
LHX1P48742 AL603825.1-201ENST00000438481 80 ntBASIC1.63□□□□□ -2.15
LHX1P48742 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.63□□□□□ -2.15
LHX1P48742 FCF1P4-201ENST00000448326 183 ntBASIC1.63□□□□□ -2.15
LHX1P48742 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 143 ms