Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AL160004.2-201ENST00000432935 350 ntBASIC1.88□□□□□ -2.11
MSH2P43246 RPL26P26-201ENST00000480251 434 ntBASIC1.88□□□□□ -2.11
MSH2P43246 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.88□□□□□ -2.11
MSH2P43246 SNORA40.14-201ENST00000516543 86 ntBASIC1.88□□□□□ -2.11
MSH2P43246 SNORA44.1-201ENST00000517031 108 ntBASIC1.88□□□□□ -2.11
MSH2P43246 AP002001.1-203ENST00000534002 267 ntBASIC1.88□□□□□ -2.11
MSH2P43246 AC024614.2-201ENST00000577584 372 ntBASIC1.88□□□□□ -2.11
MSH2P43246 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.88□□□□□ -2.11
MSH2P43246 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.88□□□□□ -2.11
MSH2P43246 Y_RNA.80-201ENST00000362996 102 ntBASIC1.87□□□□□ -2.11
MSH2P43246 RNU1-96P-201ENST00000364163 162 ntBASIC1.87□□□□□ -2.11
MSH2P43246 Y_RNA.287-201ENST00000364853 94 ntBASIC1.87□□□□□ -2.11
MSH2P43246 RNU6-439P-201ENST00000384188 106 ntBASIC1.87□□□□□ -2.11
MSH2P43246 Y_RNA.485-201ENST00000384395 102 ntBASIC1.87□□□□□ -2.11
MSH2P43246 MIR1253-201ENST00000408273 105 ntBASIC1.87□□□□□ -2.11
MSH2P43246 MIR1261-201ENST00000408659 82 ntBASIC1.87□□□□□ -2.11
MSH2P43246 MCFD2P1-201ENST00000417812 300 ntBASIC1.87□□□□□ -2.11
MSH2P43246 MTND4P19-201ENST00000446659 478 ntBASIC1.87□□□□□ -2.11
MSH2P43246 HMGN2P23-201ENST00000456759 269 ntBASIC1.87□□□□□ -2.11
MSH2P43246 Y_RNA.631-201ENST00000459607 101 ntBASIC1.87□□□□□ -2.11
MSH2P43246 AC010469.2-201ENST00000496412 480 ntBASIC1.87□□□□□ -2.11
MSH2P43246 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.87□□□□□ -2.11
MSH2P43246 RNU6-408P-201ENST00000515910 100 ntBASIC1.87□□□□□ -2.11
MSH2P43246 RN7SKP295-201ENST00000517264 153 ntBASIC1.87□□□□□ -2.11
MSH2P43246 AC023442.1-201ENST00000531247 422 ntBASIC1.87□□□□□ -2.11
MSH2P43246 MIR4419B-201ENST00000577260 68 ntBASIC1.87□□□□□ -2.11
MSH2P43246 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.87□□□□□ -2.11
MSH2P43246 U6.92-201ENST00000636464 89 ntBASIC1.87□□□□□ -2.11
MSH2P43246 MIR3674-201ENST00000636576 68 ntBASIC1.87□□□□□ -2.11
MSH2P43246 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
MSH2P43246 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
MSH2P43246 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.86□□□□□ -2.11
MSH2P43246 Y_RNA.11-201ENST00000362375 109 ntBASIC1.86□□□□□ -2.11
MSH2P43246 RNU6-1266P-201ENST00000362794 105 ntBASIC1.86□□□□□ -2.11
MSH2P43246 Y_RNA.128-201ENST00000363391 112 ntBASIC1.86□□□□□ -2.11
MSH2P43246 Y_RNA.138-201ENST00000363462 102 ntBASIC1.86□□□□□ -2.11
MSH2P43246 RNU6-961P-201ENST00000363893 105 ntBASIC1.86□□□□□ -2.11
MSH2P43246 RNU6-417P-201ENST00000384712 107 ntBASIC1.86□□□□□ -2.11
MSH2P43246 AC019129.1-201ENST00000403786 261 ntBASIC1.86□□□□□ -2.11
MSH2P43246 MRPL35P1-201ENST00000404272 572 ntBASIC1.86□□□□□ -2.11
MSH2P43246 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.86□□□□□ -2.11
MSH2P43246 CST2P1-201ENST00000425770 87 ntBASIC1.86□□□□□ -2.11
MSH2P43246 MTCO2P12-201ENST00000427426 682 ntBASIC1.86□□□□□ -2.11
MSH2P43246 AC008834.1-201ENST00000511612 175 ntBASIC1.86□□□□□ -2.11
MSH2P43246 RNU6-475P-201ENST00000516073 104 ntBASIC1.86□□□□□ -2.11
MSH2P43246 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
MSH2P43246 HSBP1P1-201ENST00000555205 166 ntBASIC1.86□□□□□ -2.11
MSH2P43246 MIR4659A-201ENST00000580269 81 ntBASIC1.86□□□□□ -2.11
MSH2P43246 AC134503.1-201ENST00000633048 54 ntBASIC1.86□□□□□ -2.11
MSH2P43246 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.86□□□□□ -2.11
MSH2P43246 ZNF355P-201ENST00000427301 3216 ntBASIC1.85□□□□□ -2.11
MSH2P43246 MIR30A-201ENST00000385092 71 ntBASIC1.85□□□□□ -2.11
MSH2P43246 RNA5SP475-201ENST00000410568 110 ntBASIC1.85□□□□□ -2.11
MSH2P43246 RPL31P63-201ENST00000422565 375 ntBASIC1.85□□□□□ -2.11
MSH2P43246 SDAD1P3-201ENST00000427380 333 ntBASIC1.85□□□□□ -2.11
MSH2P43246 AC112492.4-201ENST00000456549 352 ntBASIC1.85□□□□□ -2.11
MSH2P43246 SNORD65B-201ENST00000459126 73 ntBASIC1.85□□□□□ -2.11
MSH2P43246 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.85□□□□□ -2.11
MSH2P43246 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.85□□□□□ -2.11
MSH2P43246 MIR4298-201ENST00000584380 73 ntBASIC1.85□□□□□ -2.11
MSH2P43246 AC069114.2-201ENST00000604699 304 ntBASIC1.85□□□□□ -2.11
MSH2P43246 AC011476.5-201ENST00000615594 130 ntBASIC1.85□□□□□ -2.11
MSH2P43246 AC240442.1-201ENST00000616055 283 ntBASIC1.85□□□□□ -2.11
MSH2P43246 AC091812.1-201ENST00000432235 1948 ntBASIC1.84□□□□□ -2.11
MSH2P43246 MIR424-201ENST00000362227 98 ntBASIC1.84□□□□□ -2.11
MSH2P43246 RNU6-661P-201ENST00000362409 107 ntBASIC1.84□□□□□ -2.11
MSH2P43246 Y_RNA.28-201ENST00000362554 111 ntBASIC1.84□□□□□ -2.11
MSH2P43246 SNORD114-1-201ENST00000362705 72 ntBASIC1.84□□□□□ -2.11
MSH2P43246 RNU6-112P-201ENST00000363599 104 ntBASIC1.84□□□□□ -2.11
MSH2P43246 SNORA33-201ENST00000363664 130 ntBASIC1.84□□□□□ -2.11
MSH2P43246 RNU6-454P-201ENST00000364292 107 ntBASIC1.84□□□□□ -2.11
MSH2P43246 SNORD48-201ENST00000364953 64 ntBASIC1.84□□□□□ -2.11
MSH2P43246 RNU6-1310P-201ENST00000384153 107 ntBASIC1.84□□□□□ -2.11
MSH2P43246 MIR1302-11-201ENST00000408051 138 ntBASIC1.84□□□□□ -2.11
MSH2P43246 MIR1302-9-201ENST00000408365 138 ntBASIC1.84□□□□□ -2.11
MSH2P43246 MIR1302-10-201ENST00000408734 138 ntBASIC1.84□□□□□ -2.11
MSH2P43246 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.84□□□□□ -2.11
MSH2P43246 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.84□□□□□ -2.11
MSH2P43246 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.84□□□□□ -2.11
MSH2P43246 MIR3198-2-201ENST00000577868 80 ntBASIC1.84□□□□□ -2.11
MSH2P43246 AC022432.1-201ENST00000595739 310 ntBASIC1.84□□□□□ -2.11
MSH2P43246 MIR1302-2-201ENST00000607096 138 ntBASIC1.84□□□□□ -2.11
MSH2P43246 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.84□□□□□ -2.11
MSH2P43246 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.84□□□□□ -2.11
MSH2P43246 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.84□□□□□ -2.11
MSH2P43246 AC005592.1-201ENST00000566527 1640 ntBASIC1.84□□□□□ -2.12
MSH2P43246 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
MSH2P43246 Y_RNA.148-201ENST00000363557 117 ntBASIC1.83□□□□□ -2.12
MSH2P43246 RNU6-1019P-201ENST00000364424 107 ntBASIC1.83□□□□□ -2.12
MSH2P43246 MIR515-2-201ENST00000384883 83 ntBASIC1.83□□□□□ -2.12
MSH2P43246 MIR515-1-201ENST00000384884 83 ntBASIC1.83□□□□□ -2.12
MSH2P43246 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
MSH2P43246 AL079342.1-201ENST00000401460 267 ntBASIC1.83□□□□□ -2.12
MSH2P43246 MIR548P-201ENST00000408336 84 ntBASIC1.83□□□□□ -2.12
MSH2P43246 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.83□□□□□ -2.12
MSH2P43246 AC245047.4-201ENST00000433189 144 ntBASIC1.83□□□□□ -2.12
MSH2P43246 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.83□□□□□ -2.12
MSH2P43246 AC093852.1-201ENST00000503587 266 ntBASIC1.83□□□□□ -2.12
MSH2P43246 SNORA25.10-201ENST00000515926 124 ntBASIC1.83□□□□□ -2.12
MSH2P43246 Y_RNA.701-201ENST00000516812 110 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms