Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 COX6CP10-201ENST00000416832 224 ntBASIC1.29□□□□□ -2.2
SDC1P18827 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.29□□□□□ -2.2
SDC1P18827 AL591806.2-201ENST00000433122 173 ntBASIC1.29□□□□□ -2.2
SDC1P18827 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.29□□□□□ -2.2
SDC1P18827 MTCO3P10-201ENST00000455912 772 ntBASIC1.29□□□□□ -2.2
SDC1P18827 RPS29P29-201ENST00000456396 171 ntBASIC1.29□□□□□ -2.2
SDC1P18827 MIR2053-201ENST00000459295 91 ntBASIC1.29□□□□□ -2.2
SDC1P18827 RNU7-34P-201ENST00000459394 64 ntBASIC1.29□□□□□ -2.2
SDC1P18827 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.29□□□□□ -2.2
SDC1P18827 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.29□□□□□ -2.2
SDC1P18827 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.29□□□□□ -2.2
SDC1P18827 AC022493.2-201ENST00000506122 481 ntBASIC1.29□□□□□ -2.2
SDC1P18827 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.29□□□□□ -2.2
SDC1P18827 RNU6-559P-201ENST00000516151 98 ntBASIC1.29□□□□□ -2.2
SDC1P18827 SNORA31.10-201ENST00000516482 106 ntBASIC1.29□□□□□ -2.2
SDC1P18827 RN7SKP49-201ENST00000516675 260 ntBASIC1.29□□□□□ -2.2
SDC1P18827 CYCSP23-201ENST00000519781 313 ntBASIC1.29□□□□□ -2.2
SDC1P18827 AP002001.1-203ENST00000534002 267 ntBASIC1.29□□□□□ -2.2
SDC1P18827 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.29□□□□□ -2.2
SDC1P18827 AC068338.1-201ENST00000565567 176 ntBASIC1.29□□□□□ -2.2
SDC1P18827 MIR4709-201ENST00000577272 72 ntBASIC1.29□□□□□ -2.2
SDC1P18827 MIR4303-201ENST00000581299 66 ntBASIC1.29□□□□□ -2.2
SDC1P18827 AC087588.2-201ENST00000617667 426 ntBASIC1.29□□□□□ -2.2
SDC1P18827 MIR8063-201ENST00000621930 81 ntBASIC1.29□□□□□ -2.2
SDC1P18827 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.28□□□□□ -2.2
SDC1P18827 RNU6-1301P-201ENST00000362724 104 ntBASIC1.28□□□□□ -2.2
SDC1P18827 Y_RNA.303-201ENST00000364998 94 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AL355796.1-201ENST00000406706 323 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AC010154.1-201ENST00000425857 269 ntBASIC1.28□□□□□ -2.2
SDC1P18827 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.28□□□□□ -2.2
SDC1P18827 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.28□□□□□ -2.2
SDC1P18827 MRPS10P1-201ENST00000448483 130 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AC099513.1-201ENST00000490423 301 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AC074133.1-201ENST00000515696 183 ntBASIC1.28□□□□□ -2.2
SDC1P18827 RNU7-99P-201ENST00000516271 62 ntBASIC1.28□□□□□ -2.2
SDC1P18827 RNU6-277P-201ENST00000516272 106 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AC023157.2-201ENST00000540596 141 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AC018448.1-201ENST00000552843 316 ntBASIC1.28□□□□□ -2.2
SDC1P18827 SUB1P3-201ENST00000564581 315 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AC015688.6-201ENST00000577737 104 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.28□□□□□ -2.2
SDC1P18827 AC005730.3-201ENST00000583067 366 ntBASIC1.28□□□□□ -2.2
SDC1P18827 MIR5690-201ENST00000583739 73 ntBASIC1.28□□□□□ -2.2
SDC1P18827 MIR4298-201ENST00000584380 73 ntBASIC1.28□□□□□ -2.2
SDC1P18827 MIR4438-201ENST00000585271 93 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AL929325.1-201ENST00000603096 117 ntBASIC1.28□□□□□ -2.2
SDC1P18827 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.28□□□□□ -2.2
SDC1P18827 MIR7843-201ENST00000622274 79 ntBASIC1.28□□□□□ -2.2
SDC1P18827 AC073544.1-201ENST00000600110 1595 ntBASIC1.27□□□□□ -2.21
SDC1P18827 Y_RNA.142-201ENST00000363491 102 ntBASIC1.27□□□□□ -2.21
SDC1P18827 SNORD1A-201ENST00000364968 72 ntBASIC1.27□□□□□ -2.21
SDC1P18827 Y_RNA.577-201ENST00000384794 101 ntBASIC1.27□□□□□ -2.21
SDC1P18827 RNU6-955P-201ENST00000410497 104 ntBASIC1.27□□□□□ -2.21
SDC1P18827 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.27□□□□□ -2.21
SDC1P18827 PCNPP5-201ENST00000452246 481 ntBASIC1.27□□□□□ -2.21
SDC1P18827 RPS29P23-201ENST00000458635 123 ntBASIC1.27□□□□□ -2.21
SDC1P18827 RPS26P55-201ENST00000471178 356 ntBASIC1.27□□□□□ -2.21
SDC1P18827 RPS27P22-201ENST00000478056 241 ntBASIC1.27□□□□□ -2.21
SDC1P18827 AC010469.2-201ENST00000496412 480 ntBASIC1.27□□□□□ -2.21
SDC1P18827 AC105758.1-201ENST00000506038 399 ntBASIC1.27□□□□□ -2.21
SDC1P18827 AC010598.1-201ENST00000510378 103 ntBASIC1.27□□□□□ -2.21
SDC1P18827 SNORA40.9-201ENST00000515895 93 ntBASIC1.27□□□□□ -2.21
SDC1P18827 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.27□□□□□ -2.21
SDC1P18827 AL442163.3-201ENST00000554110 156 ntBASIC1.27□□□□□ -2.21
SDC1P18827 MIR4422-201ENST00000581938 83 ntBASIC1.27□□□□□ -2.21
SDC1P18827 UBE2V2P2-201ENST00000587677 504 ntBASIC1.27□□□□□ -2.21
SDC1P18827 AC080078.3-201ENST00000605407 463 ntBASIC1.27□□□□□ -2.21
SDC1P18827 MIR6715A-201ENST00000615929 79 ntBASIC1.27□□□□□ -2.21
SDC1P18827 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
SDC1P18827 MIR410-201ENST00000362222 80 ntBASIC1.26□□□□□ -2.21
SDC1P18827 Y_RNA.67-201ENST00000362870 100 ntBASIC1.26□□□□□ -2.21
SDC1P18827 SNORA72.1-201ENST00000363485 129 ntBASIC1.26□□□□□ -2.21
SDC1P18827 SNORA20B-201ENST00000384220 132 ntBASIC1.26□□□□□ -2.21
SDC1P18827 SNORD116-29-201ENST00000384516 83 ntBASIC1.26□□□□□ -2.21
SDC1P18827 SNORA12.1-201ENST00000390873 148 ntBASIC1.26□□□□□ -2.21
SDC1P18827 RNU1-78P-201ENST00000391248 165 ntBASIC1.26□□□□□ -2.21
SDC1P18827 RNU6-1156P-201ENST00000410365 100 ntBASIC1.26□□□□□ -2.21
SDC1P18827 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.26□□□□□ -2.21
SDC1P18827 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.26□□□□□ -2.21
SDC1P18827 RAB28P5-201ENST00000427490 651 ntBASIC1.26□□□□□ -2.21
SDC1P18827 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.26□□□□□ -2.21
SDC1P18827 RPL30P15-201ENST00000457129 321 ntBASIC1.26□□□□□ -2.21
SDC1P18827 RNU1-123P-201ENST00000458950 160 ntBASIC1.26□□□□□ -2.21
SDC1P18827 RNU6-625P-201ENST00000459412 107 ntBASIC1.26□□□□□ -2.21
SDC1P18827 AC108210.2-201ENST00000503681 201 ntBASIC1.26□□□□□ -2.21
SDC1P18827 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.26□□□□□ -2.21
SDC1P18827 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.26□□□□□ -2.21
SDC1P18827 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.26□□□□□ -2.21
SDC1P18827 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.26□□□□□ -2.21
SDC1P18827 AC021506.2-201ENST00000612354 169 ntBASIC1.26□□□□□ -2.21
SDC1P18827 AC006435.5-201ENST00000624486 112 ntBASIC1.26□□□□□ -2.21
SDC1P18827 MTND4LP32-201ENST00000636111 270 ntBASIC1.26□□□□□ -2.21
SDC1P18827 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
SDC1P18827 RNU1-17P-201ENST00000363022 152 ntBASIC1.25□□□□□ -2.21
SDC1P18827 RNU6-1297P-201ENST00000384415 104 ntBASIC1.25□□□□□ -2.21
SDC1P18827 Y_RNA.498-201ENST00000384460 102 ntBASIC1.25□□□□□ -2.21
SDC1P18827 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.25□□□□□ -2.21
SDC1P18827 Y_RNA.592-201ENST00000410274 109 ntBASIC1.25□□□□□ -2.21
SDC1P18827 SNORD12B-201ENST00000410433 91 ntBASIC1.25□□□□□ -2.21
SDC1P18827 AC004965.1-201ENST00000413033 213 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 129.5 ms