Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AL357078.3-201ENST00000607528 618 ntBASIC0.11□□□□□ -2.39
TPM1P09493 MIR8070-201ENST00000616510 88 ntBASIC0.11□□□□□ -2.39
TPM1P09493 AC005609.4-201ENST00000625071 447 ntBASIC0.11□□□□□ -2.39
TPM1P09493 RNA5SP48-201ENST00000363969 126 ntBASIC0.1□□□□□ -2.39
TPM1P09493 RNU4-41P-201ENST00000364426 143 ntBASIC0.1□□□□□ -2.39
TPM1P09493 RNA5SP299-201ENST00000391203 116 ntBASIC0.1□□□□□ -2.39
TPM1P09493 RPS20P10-201ENST00000451209 253 ntBASIC0.1□□□□□ -2.39
TPM1P09493 TPTE2P5-203ENST00000458118 728 ntBASIC0.1□□□□□ -2.39
TPM1P09493 AC092436.3-201ENST00000511788 257 ntBASIC0.1□□□□□ -2.39
TPM1P09493 RNU6-1129P-201ENST00000515964 104 ntBASIC0.1□□□□□ -2.39
TPM1P09493 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.1□□□□□ -2.39
TPM1P09493 AL358944.1-201ENST00000528537 144 ntBASIC0.1□□□□□ -2.39
TPM1P09493 AC007684.1-201ENST00000609671 477 ntBASIC0.1□□□□□ -2.39
TPM1P09493 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.1□□□□□ -2.39
TPM1P09493 MIR1-1-201ENST00000362147 71 ntBASIC0.09□□□□□ -2.4
TPM1P09493 RNU5F-3P-201ENST00000363767 117 ntBASIC0.09□□□□□ -2.4
TPM1P09493 RNU4-9P-201ENST00000364951 139 ntBASIC0.09□□□□□ -2.4
TPM1P09493 SNORA25.9-201ENST00000365087 128 ntBASIC0.09□□□□□ -2.4
TPM1P09493 RNU6-376P-201ENST00000384731 106 ntBASIC0.09□□□□□ -2.4
TPM1P09493 MIR153-2-201ENST00000385225 87 ntBASIC0.09□□□□□ -2.4
TPM1P09493 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.09□□□□□ -2.4
TPM1P09493 MIR936-201ENST00000401264 98 ntBASIC0.09□□□□□ -2.4
TPM1P09493 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC0.09□□□□□ -2.4
TPM1P09493 HSFY5P-201ENST00000453726 309 ntBASIC0.09□□□□□ -2.4
TPM1P09493 SNORA74.3-201ENST00000517108 154 ntBASIC0.09□□□□□ -2.4
TPM1P09493 RNU6-1223P-201ENST00000517124 104 ntBASIC0.09□□□□□ -2.4
TPM1P09493 AC016957.1-201ENST00000534895 309 ntBASIC0.09□□□□□ -2.4
TPM1P09493 MIR5692C1-201ENST00000585309 91 ntBASIC0.09□□□□□ -2.4
TPM1P09493 AL158209.2-201ENST00000619266 216 ntBASIC0.09□□□□□ -2.4
TPM1P09493 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.08□□□□□ -2.4
TPM1P09493 SNORD50.1-201ENST00000362987 71 ntBASIC0.08□□□□□ -2.4
TPM1P09493 RNU6-280P-201ENST00000364145 104 ntBASIC0.08□□□□□ -2.4
TPM1P09493 RNY3P9-201ENST00000384727 106 ntBASIC0.08□□□□□ -2.4
TPM1P09493 MIR573-201ENST00000384964 99 ntBASIC0.08□□□□□ -2.4
TPM1P09493 AL590002.1-201ENST00000406554 418 ntBASIC0.08□□□□□ -2.4
TPM1P09493 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.08□□□□□ -2.4
TPM1P09493 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.08□□□□□ -2.4
TPM1P09493 RNU6-1096P-201ENST00000517089 102 ntBASIC0.08□□□□□ -2.4
TPM1P09493 AC091144.1-201ENST00000519573 138 ntBASIC0.08□□□□□ -2.4
TPM1P09493 MIR4431-201ENST00000579990 94 ntBASIC0.08□□□□□ -2.4
TPM1P09493 AC104695.3-201ENST00000604052 296 ntBASIC0.08□□□□□ -2.4
TPM1P09493 AC100812.1-201ENST00000607622 580 ntBASIC0.08□□□□□ -2.4
TPM1P09493 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.07□□□□□ -2.4
TPM1P09493 FGF7P2-201ENST00000332473 296 ntBASIC0.07□□□□□ -2.4
TPM1P09493 MIR103A1-201ENST00000362165 78 ntBASIC0.07□□□□□ -2.4
TPM1P09493 Y_RNA.159-201ENST00000363674 87 ntBASIC0.07□□□□□ -2.4
TPM1P09493 RNU6-214P-201ENST00000384130 107 ntBASIC0.07□□□□□ -2.4
TPM1P09493 SNORA20B-201ENST00000384220 132 ntBASIC0.07□□□□□ -2.4
TPM1P09493 RNU6-584P-201ENST00000410350 95 ntBASIC0.07□□□□□ -2.4
TPM1P09493 RNU5A-5P-201ENST00000411054 116 ntBASIC0.07□□□□□ -2.4
TPM1P09493 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.07□□□□□ -2.4
TPM1P09493 PIGPP3-201ENST00000425307 415 ntBASIC0.07□□□□□ -2.4
TPM1P09493 MRPS10P2-201ENST00000431226 381 ntBASIC0.07□□□□□ -2.4
TPM1P09493 Z82188.1-201ENST00000436709 154 ntBASIC0.07□□□□□ -2.4
TPM1P09493 MTCO2P16-201ENST00000436962 677 ntBASIC0.07□□□□□ -2.4
TPM1P09493 AC079354.2-201ENST00000453523 154 ntBASIC0.07□□□□□ -2.4
TPM1P09493 AC074133.1-201ENST00000515696 183 ntBASIC0.07□□□□□ -2.4
TPM1P09493 RNU6-405P-201ENST00000516637 110 ntBASIC0.07□□□□□ -2.4
TPM1P09493 AC023442.1-201ENST00000531247 422 ntBASIC0.07□□□□□ -2.4
TPM1P09493 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.07□□□□□ -2.4
TPM1P09493 AC087683.1-201ENST00000591187 441 ntBASIC0.07□□□□□ -2.4
TPM1P09493 AC092747.3-201ENST00000603769 301 ntBASIC0.07□□□□□ -2.4
TPM1P09493 AC010999.1-201ENST00000611856 324 ntBASIC0.07□□□□□ -2.4
TPM1P09493 AL138726.1-201ENST00000614873 333 ntBASIC0.07□□□□□ -2.4
TPM1P09493 AC006504.8-201ENST00000621046 635 ntBASIC0.07□□□□□ -2.4
TPM1P09493 RNU4-45P-201ENST00000365469 141 ntBASIC0.06□□□□□ -2.4
TPM1P09493 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.06□□□□□ -2.4
TPM1P09493 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.06□□□□□ -2.4
TPM1P09493 PCNPP5-201ENST00000452246 481 ntBASIC0.06□□□□□ -2.4
TPM1P09493 AC105313.1-201ENST00000509121 353 ntBASIC0.06□□□□□ -2.4
TPM1P09493 AC093303.1-201ENST00000514549 295 ntBASIC0.06□□□□□ -2.4
TPM1P09493 MIR4764-201ENST00000580680 88 ntBASIC0.06□□□□□ -2.4
TPM1P09493 AL121757.2-201ENST00000611223 313 ntBASIC0.06□□□□□ -2.4
TPM1P09493 AC015726.2-201ENST00000620112 122 ntBASIC0.06□□□□□ -2.4
TPM1P09493 AC079248.2-201ENST00000623779 326 ntBASIC0.06□□□□□ -2.4
TPM1P09493 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
TPM1P09493 AL589743.1-201ENST00000551932 2712 ntBASIC0.06□□□□□ -2.4
TPM1P09493 Y_RNA.179-201ENST00000363844 90 ntBASIC0.05□□□□□ -2.4
TPM1P09493 RNU6-553P-201ENST00000364047 96 ntBASIC0.05□□□□□ -2.4
TPM1P09493 SNORD14.1-201ENST00000365609 90 ntBASIC0.05□□□□□ -2.4
TPM1P09493 RNU6-159P-201ENST00000391080 106 ntBASIC0.05□□□□□ -2.4
TPM1P09493 MIR1298-201ENST00000408783 112 ntBASIC0.05□□□□□ -2.4
TPM1P09493 RNA5SP193-201ENST00000410353 107 ntBASIC0.05□□□□□ -2.4
TPM1P09493 RNU6-1304P-201ENST00000411374 106 ntBASIC0.05□□□□□ -2.4
TPM1P09493 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.05□□□□□ -2.4
TPM1P09493 AC018865.2-201ENST00000423631 129 ntBASIC0.05□□□□□ -2.4
TPM1P09493 AC091885.1-201ENST00000506658 268 ntBASIC0.05□□□□□ -2.4
TPM1P09493 RNA5SP20-201ENST00000515976 84 ntBASIC0.05□□□□□ -2.4
TPM1P09493 RNU6-1278P-201ENST00000516130 107 ntBASIC0.05□□□□□ -2.4
TPM1P09493 RNU6-232P-201ENST00000517144 64 ntBASIC0.05□□□□□ -2.4
TPM1P09493 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.05□□□□□ -2.4
TPM1P09493 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.05□□□□□ -2.4
TPM1P09493 MIR3913-1-201ENST00000577744 102 ntBASIC0.05□□□□□ -2.4
TPM1P09493 AC100830.2-201ENST00000581636 240 ntBASIC0.05□□□□□ -2.4
TPM1P09493 AL133215.3-201ENST00000609801 448 ntBASIC0.05□□□□□ -2.4
TPM1P09493 AL158063.1-201ENST00000615349 536 ntBASIC0.05□□□□□ -2.4
TPM1P09493 AC072046.2-201ENST00000618366 268 ntBASIC0.05□□□□□ -2.4
TPM1P09493 AF246928.1-201ENST00000623768 87 ntBASIC0.05□□□□□ -2.4
TPM1P09493 RNU4-21P-201ENST00000362802 126 ntBASIC0.04□□□□□ -2.4
TPM1P09493 Y_RNA.201-201ENST00000364052 96 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms