Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 Y_RNA.474-201ENST00000384341 102 ntBASIC1.48□□□□□ -2.17
VIMP08670 Y_RNA.498-201ENST00000384460 102 ntBASIC1.48□□□□□ -2.17
VIMP08670 RNU6-950P-201ENST00000384651 107 ntBASIC1.48□□□□□ -2.17
VIMP08670 MRPL35P1-201ENST00000404272 572 ntBASIC1.48□□□□□ -2.17
VIMP08670 AL355796.1-201ENST00000406706 323 ntBASIC1.48□□□□□ -2.17
VIMP08670 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.48□□□□□ -2.17
VIMP08670 AC027119.1-201ENST00000440877 241 ntBASIC1.48□□□□□ -2.17
VIMP08670 AC245517.4-201ENST00000448601 281 ntBASIC1.48□□□□□ -2.17
VIMP08670 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.48□□□□□ -2.17
VIMP08670 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.48□□□□□ -2.17
VIMP08670 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.48□□□□□ -2.17
VIMP08670 RNU6-250P-201ENST00000516958 103 ntBASIC1.48□□□□□ -2.17
VIMP08670 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.48□□□□□ -2.17
VIMP08670 MIR5690-201ENST00000583739 73 ntBASIC1.48□□□□□ -2.17
VIMP08670 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
VIMP08670 AC021506.2-201ENST00000612354 169 ntBASIC1.48□□□□□ -2.17
VIMP08670 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.48□□□□□ -2.17
VIMP08670 RNU6-1283P-201ENST00000365314 105 ntBASIC1.47□□□□□ -2.17
VIMP08670 SNORD26-201ENST00000384147 75 ntBASIC1.47□□□□□ -2.17
VIMP08670 RNU6-1031P-201ENST00000384773 107 ntBASIC1.47□□□□□ -2.17
VIMP08670 SNORA75.6-201ENST00000391318 127 ntBASIC1.47□□□□□ -2.17
VIMP08670 MRPL42P3-201ENST00000401492 326 ntBASIC1.47□□□□□ -2.17
VIMP08670 AC114482.1-201ENST00000418010 247 ntBASIC1.47□□□□□ -2.17
VIMP08670 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.47□□□□□ -2.17
VIMP08670 RPS27P16-201ENST00000425758 201 ntBASIC1.47□□□□□ -2.17
VIMP08670 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.47□□□□□ -2.17
VIMP08670 AC022493.2-201ENST00000506122 481 ntBASIC1.47□□□□□ -2.17
VIMP08670 SNORA40.9-201ENST00000515895 93 ntBASIC1.47□□□□□ -2.17
VIMP08670 RNU6-902P-201ENST00000517212 91 ntBASIC1.47□□□□□ -2.17
VIMP08670 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.47□□□□□ -2.17
VIMP08670 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
VIMP08670 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
VIMP08670 RNU6-1301P-201ENST00000362724 104 ntBASIC1.46□□□□□ -2.18
VIMP08670 MIR150-201ENST00000385048 84 ntBASIC1.46□□□□□ -2.18
VIMP08670 MIR513A1-201ENST00000385138 129 ntBASIC1.46□□□□□ -2.18
VIMP08670 RNU6-440P-201ENST00000390882 105 ntBASIC1.46□□□□□ -2.18
VIMP08670 RN7SKP200-201ENST00000410564 320 ntBASIC1.46□□□□□ -2.18
VIMP08670 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.46□□□□□ -2.18
VIMP08670 RNU6-625P-201ENST00000459412 107 ntBASIC1.46□□□□□ -2.18
VIMP08670 RNU6-559P-201ENST00000516151 98 ntBASIC1.46□□□□□ -2.18
VIMP08670 RNU6-295P-201ENST00000516901 104 ntBASIC1.46□□□□□ -2.18
VIMP08670 RNU6-264P-201ENST00000517134 104 ntBASIC1.46□□□□□ -2.18
VIMP08670 AP002001.1-203ENST00000534002 267 ntBASIC1.46□□□□□ -2.18
VIMP08670 MIR3937-201ENST00000580135 106 ntBASIC1.46□□□□□ -2.18
VIMP08670 AC073413.2-201ENST00000604332 360 ntBASIC1.46□□□□□ -2.18
VIMP08670 AC113139.1-201ENST00000605049 239 ntBASIC1.46□□□□□ -2.18
VIMP08670 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.46□□□□□ -2.18
VIMP08670 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
VIMP08670 AC018630.2-201ENST00000534866 2403 ntBASIC1.45□□□□□ -2.18
VIMP08670 SNORD33-201ENST00000362761 85 ntBASIC1.45□□□□□ -2.18
VIMP08670 RNU6-890P-201ENST00000384121 107 ntBASIC1.45□□□□□ -2.18
VIMP08670 Y_RNA.577-201ENST00000384794 101 ntBASIC1.45□□□□□ -2.18
VIMP08670 MIR625-201ENST00000385047 85 ntBASIC1.45□□□□□ -2.18
VIMP08670 MTCYBP4-201ENST00000401524 249 ntBASIC1.45□□□□□ -2.18
VIMP08670 RNU6-1156P-201ENST00000410365 100 ntBASIC1.45□□□□□ -2.18
VIMP08670 SNORD12B-201ENST00000410433 91 ntBASIC1.45□□□□□ -2.18
VIMP08670 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.45□□□□□ -2.18
VIMP08670 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.45□□□□□ -2.18
VIMP08670 MTCO3P10-201ENST00000455912 772 ntBASIC1.45□□□□□ -2.18
VIMP08670 RPL30P15-201ENST00000457129 321 ntBASIC1.45□□□□□ -2.18
VIMP08670 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.45□□□□□ -2.18
VIMP08670 AC097462.1-201ENST00000514125 324 ntBASIC1.45□□□□□ -2.18
VIMP08670 AL390123.1-201ENST00000603216 237 ntBASIC1.45□□□□□ -2.18
VIMP08670 AC087588.2-201ENST00000617667 426 ntBASIC1.45□□□□□ -2.18
VIMP08670 MIR410-201ENST00000362222 80 ntBASIC1.44□□□□□ -2.18
VIMP08670 RNU1-22P-201ENST00000363334 158 ntBASIC1.44□□□□□ -2.18
VIMP08670 RNU6-407P-201ENST00000365280 104 ntBASIC1.44□□□□□ -2.18
VIMP08670 SNORA69.1-201ENST00000390904 137 ntBASIC1.44□□□□□ -2.18
VIMP08670 SNORA26.9-201ENST00000391322 122 ntBASIC1.44□□□□□ -2.18
VIMP08670 MTCO3P19-201ENST00000415864 321 ntBASIC1.44□□□□□ -2.18
VIMP08670 RAB28P5-201ENST00000427490 651 ntBASIC1.44□□□□□ -2.18
VIMP08670 AL121890.1-201ENST00000435457 205 ntBASIC1.44□□□□□ -2.18
VIMP08670 AL135790.2-201ENST00000437701 267 ntBASIC1.44□□□□□ -2.18
VIMP08670 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.44□□□□□ -2.18
VIMP08670 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.44□□□□□ -2.18
VIMP08670 RNU7-94P-201ENST00000459576 63 ntBASIC1.44□□□□□ -2.18
VIMP08670 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.44□□□□□ -2.18
VIMP08670 UBL5P3-201ENST00000475112 231 ntBASIC1.44□□□□□ -2.18
VIMP08670 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.44□□□□□ -2.18
VIMP08670 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.44□□□□□ -2.18
VIMP08670 RNU7-172P-201ENST00000517125 64 ntBASIC1.44□□□□□ -2.18
VIMP08670 MIR2355-201ENST00000517199 87 ntBASIC1.44□□□□□ -2.18
VIMP08670 AC080078.3-201ENST00000605407 463 ntBASIC1.44□□□□□ -2.18
VIMP08670 AL365434.2-201ENST00000607979 234 ntBASIC1.44□□□□□ -2.18
VIMP08670 AC040896.1-201ENST00000613819 479 ntBASIC1.44□□□□□ -2.18
VIMP08670 AL121890.5-201ENST00000620848 304 ntBASIC1.44□□□□□ -2.18
VIMP08670 MIR3674-201ENST00000636576 68 ntBASIC1.44□□□□□ -2.18
VIMP08670 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
VIMP08670 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.44□□□□□ -2.18
VIMP08670 RNU6-1123P-201ENST00000362347 106 ntBASIC1.43□□□□□ -2.18
VIMP08670 Y_RNA.142-201ENST00000363491 102 ntBASIC1.43□□□□□ -2.18
VIMP08670 RNU6-454P-201ENST00000364292 107 ntBASIC1.43□□□□□ -2.18
VIMP08670 RNA5SP259-201ENST00000365541 109 ntBASIC1.43□□□□□ -2.18
VIMP08670 MIR23A-201ENST00000385245 73 ntBASIC1.43□□□□□ -2.18
VIMP08670 U8.13-201ENST00000390842 128 ntBASIC1.43□□□□□ -2.18
VIMP08670 SNORA12.1-201ENST00000390873 148 ntBASIC1.43□□□□□ -2.18
VIMP08670 SNORA67.6-201ENST00000391093 99 ntBASIC1.43□□□□□ -2.18
VIMP08670 MIR1323-201ENST00000408090 73 ntBASIC1.43□□□□□ -2.18
VIMP08670 RNA5SP475-201ENST00000410568 110 ntBASIC1.43□□□□□ -2.18
VIMP08670 AC018865.2-201ENST00000423631 129 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms