Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MIR5695-201ENST00000579717 85 ntBASIC1.2□□□□□ -2.22
MSH4O15457 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.2□□□□□ -2.22
MSH4O15457 SNORD114-21-201ENST00000606412 72 ntBASIC1.2□□□□□ -2.22
MSH4O15457 AC092794.1-201ENST00000612734 582 ntBASIC1.2□□□□□ -2.22
MSH4O15457 AC040896.1-201ENST00000613819 479 ntBASIC1.2□□□□□ -2.22
MSH4O15457 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
MSH4O15457 CASC19-280ENST00000642102 1351 ntBASIC1.2□□□□□ -2.22
MSH4O15457 SNORD114-27-201ENST00000363766 70 ntBASIC1.19□□□□□ -2.22
MSH4O15457 RNU6-595P-201ENST00000363944 107 ntBASIC1.19□□□□□ -2.22
MSH4O15457 MIR10B-201ENST00000385011 110 ntBASIC1.19□□□□□ -2.22
MSH4O15457 MIR1285-1-201ENST00000408593 84 ntBASIC1.19□□□□□ -2.22
MSH4O15457 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.19□□□□□ -2.22
MSH4O15457 MTND1P17-201ENST00000448961 204 ntBASIC1.19□□□□□ -2.22
MSH4O15457 AC093303.1-201ENST00000514549 295 ntBASIC1.19□□□□□ -2.22
MSH4O15457 RAB11AP2-201ENST00000545905 639 ntBASIC1.19□□□□□ -2.22
MSH4O15457 AL137100.2-201ENST00000555786 315 ntBASIC1.19□□□□□ -2.22
MSH4O15457 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.19□□□□□ -2.22
MSH4O15457 FRG2DP-202ENST00000566967 323 ntBASIC1.19□□□□□ -2.22
MSH4O15457 AC060780.3-201ENST00000589464 80 ntBASIC1.19□□□□□ -2.22
MSH4O15457 AC022432.1-201ENST00000595739 310 ntBASIC1.19□□□□□ -2.22
MSH4O15457 AL365434.2-201ENST00000607979 234 ntBASIC1.19□□□□□ -2.22
MSH4O15457 U6atac.1-201ENST00000616025 117 ntBASIC1.19□□□□□ -2.22
MSH4O15457 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
MSH4O15457 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
MSH4O15457 RNU6-1123P-201ENST00000362347 106 ntBASIC1.18□□□□□ -2.22
MSH4O15457 Y_RNA.191-201ENST00000363972 113 ntBASIC1.18□□□□□ -2.22
MSH4O15457 SNORD114-22-201ENST00000365423 72 ntBASIC1.18□□□□□ -2.22
MSH4O15457 RNA5SP259-201ENST00000365541 109 ntBASIC1.18□□□□□ -2.22
MSH4O15457 RNU6-842P-201ENST00000384269 107 ntBASIC1.18□□□□□ -2.22
MSH4O15457 RNU6-876P-201ENST00000391295 104 ntBASIC1.18□□□□□ -2.22
MSH4O15457 MIR548F5-201ENST00000408421 86 ntBASIC1.18□□□□□ -2.22
MSH4O15457 AL139396.1-201ENST00000421137 167 ntBASIC1.18□□□□□ -2.22
MSH4O15457 SNX2P2-201ENST00000424553 323 ntBASIC1.18□□□□□ -2.22
MSH4O15457 USMG5P1-201ENST00000425964 177 ntBASIC1.18□□□□□ -2.22
MSH4O15457 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.18□□□□□ -2.22
MSH4O15457 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.18□□□□□ -2.22
MSH4O15457 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.18□□□□□ -2.22
MSH4O15457 MTND5P5-201ENST00000503764 376 ntBASIC1.18□□□□□ -2.22
MSH4O15457 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.18□□□□□ -2.22
MSH4O15457 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.18□□□□□ -2.22
MSH4O15457 AC011712.1-201ENST00000588959 234 ntBASIC1.18□□□□□ -2.22
MSH4O15457 MZT1P2-201ENST00000604387 248 ntBASIC1.18□□□□□ -2.22
MSH4O15457 AC022217.4-201ENST00000604389 163 ntBASIC1.18□□□□□ -2.22
MSH4O15457 AL355802.3-201ENST00000607571 545 ntBASIC1.18□□□□□ -2.22
MSH4O15457 AC010999.1-201ENST00000611856 324 ntBASIC1.18□□□□□ -2.22
MSH4O15457 AC021506.2-201ENST00000612354 169 ntBASIC1.18□□□□□ -2.22
MSH4O15457 Y_RNA.160-201ENST00000363677 92 ntBASIC1.17□□□□□ -2.22
MSH4O15457 Y_RNA.184-201ENST00000363884 108 ntBASIC1.17□□□□□ -2.22
MSH4O15457 Y_RNA.490-201ENST00000384413 102 ntBASIC1.17□□□□□ -2.22
MSH4O15457 RNU6-510P-201ENST00000391239 108 ntBASIC1.17□□□□□ -2.22
MSH4O15457 MTND3P8-201ENST00000412909 339 ntBASIC1.17□□□□□ -2.22
MSH4O15457 AC245047.3-201ENST00000429428 127 ntBASIC1.17□□□□□ -2.22
MSH4O15457 MTND1P2-201ENST00000430604 821 ntBASIC1.17□□□□□ -2.22
MSH4O15457 MTND3P23-201ENST00000431980 347 ntBASIC1.17□□□□□ -2.22
MSH4O15457 RPS3AP52-201ENST00000435639 297 ntBASIC1.17□□□□□ -2.22
MSH4O15457 MTND4P18-201ENST00000447010 465 ntBASIC1.17□□□□□ -2.22
MSH4O15457 RPL30P7-201ENST00000479312 323 ntBASIC1.17□□□□□ -2.22
MSH4O15457 SNORA31.10-201ENST00000516482 106 ntBASIC1.17□□□□□ -2.22
MSH4O15457 RNU6-107P-201ENST00000516643 102 ntBASIC1.17□□□□□ -2.22
MSH4O15457 Y_RNA.706-201ENST00000516933 99 ntBASIC1.17□□□□□ -2.22
MSH4O15457 APOOP3-201ENST00000536787 586 ntBASIC1.17□□□□□ -2.22
MSH4O15457 MIR4452-201ENST00000583004 71 ntBASIC1.17□□□□□ -2.22
MSH4O15457 AC136443.5-201ENST00000603741 370 ntBASIC1.17□□□□□ -2.22
MSH4O15457 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.17□□□□□ -2.22
MSH4O15457 U6.73-201ENST00000619194 103 ntBASIC1.17□□□□□ -2.22
MSH4O15457 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.17□□□□□ -2.22
MSH4O15457 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.17□□□□□ -2.22
MSH4O15457 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
MSH4O15457 RNU6-222P-201ENST00000362438 107 ntBASIC1.16□□□□□ -2.22
MSH4O15457 Y_RNA.116-201ENST00000363292 103 ntBASIC1.16□□□□□ -2.22
MSH4O15457 RNU6-1031P-201ENST00000384773 107 ntBASIC1.16□□□□□ -2.22
MSH4O15457 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.16□□□□□ -2.22
MSH4O15457 USP9YP16-201ENST00000430287 407 ntBASIC1.16□□□□□ -2.22
MSH4O15457 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.16□□□□□ -2.22
MSH4O15457 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.16□□□□□ -2.22
MSH4O15457 FGF7P6-202ENST00000451282 293 ntBASIC1.16□□□□□ -2.22
MSH4O15457 USP9YP23-201ENST00000455085 407 ntBASIC1.16□□□□□ -2.22
MSH4O15457 RPL31P58-201ENST00000469001 379 ntBASIC1.16□□□□□ -2.22
MSH4O15457 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.16□□□□□ -2.22
MSH4O15457 RNU6-1114P-201ENST00000516022 107 ntBASIC1.16□□□□□ -2.22
MSH4O15457 RNU7-30P-201ENST00000516835 62 ntBASIC1.16□□□□□ -2.22
MSH4O15457 RNU7-128P-201ENST00000517247 62 ntBASIC1.16□□□□□ -2.22
MSH4O15457 AC091144.1-201ENST00000519573 138 ntBASIC1.16□□□□□ -2.22
MSH4O15457 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.16□□□□□ -2.22
MSH4O15457 CBX3P8-201ENST00000532412 525 ntBASIC1.16□□□□□ -2.22
MSH4O15457 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.16□□□□□ -2.22
MSH4O15457 CYP3A52P-201ENST00000563326 91 ntBASIC1.16□□□□□ -2.22
MSH4O15457 AC100812.1-201ENST00000607622 580 ntBASIC1.16□□□□□ -2.22
MSH4O15457 MIR8054-201ENST00000620877 86 ntBASIC1.16□□□□□ -2.22
MSH4O15457 MIR6767-201ENST00000637302 66 ntBASIC1.16□□□□□ -2.22
MSH4O15457 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.16□□□□□ -2.22
MSH4O15457 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
MSH4O15457 Y_RNA.2-201ENST00000362330 96 ntBASIC1.15□□□□□ -2.23
MSH4O15457 RNU6-1080P-201ENST00000383982 107 ntBASIC1.15□□□□□ -2.23
MSH4O15457 MT-TL1-201ENST00000386347 75 ntBASIC1.15□□□□□ -2.23
MSH4O15457 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
MSH4O15457 MIR548K-201ENST00000408406 116 ntBASIC1.15□□□□□ -2.23
MSH4O15457 RN7SKP200-201ENST00000410564 320 ntBASIC1.15□□□□□ -2.23
MSH4O15457 RNU6-1304P-201ENST00000411374 106 ntBASIC1.15□□□□□ -2.23
MSH4O15457 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms