Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS28Q9UK41 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
VPS28Q9UK41 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.78□□□□□ -2.12
VPS28Q9UK41 RNU6-1264P-201ENST00000383891 107 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 RNU6-1145P-201ENST00000384246 107 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 AL627390.1-201ENST00000396055 340 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.78□□□□□ -2.12
VPS28Q9UK41 AC074133.1-201ENST00000515696 183 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 RNU6-250P-201ENST00000516958 103 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 RNU6-264P-201ENST00000517134 104 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 FRG2DP-202ENST00000566967 323 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 MIR4709-201ENST00000577272 72 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 SNORA77B-201ENST00000578179 125 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 MIR3618-201ENST00000580330 88 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.78□□□□□ -2.12
VPS28Q9UK41 MIR1244-1-201ENST00000612829 85 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 AC006435.5-201ENST00000624486 112 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 MIR1244-3-201ENST00000635744 85 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 MIR1244-2-201ENST00000636449 85 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 MIR1244-4-202ENST00000636813 85 ntBASIC1.78□□□□□ -2.12
VPS28Q9UK41 RNA5SP361-201ENST00000362686 118 ntBASIC1.77□□□□□ -2.13
VPS28Q9UK41 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.77□□□□□ -2.13
VPS28Q9UK41 Y_RNA.390-201ENST00000383932 102 ntBASIC1.77□□□□□ -2.13
VPS28Q9UK41 SNORA75.6-201ENST00000391318 127 ntBASIC1.77□□□□□ -2.13
VPS28Q9UK41 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS28Q9UK41 U8.22-201ENST00000459141 133 ntBASIC1.77□□□□□ -2.13
VPS28Q9UK41 RPS26P45-201ENST00000471748 340 ntBASIC1.77□□□□□ -2.13
VPS28Q9UK41 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.77□□□□□ -2.13
VPS28Q9UK41 RN7SKP49-201ENST00000516675 260 ntBASIC1.77□□□□□ -2.13
VPS28Q9UK41 MIR2355-201ENST00000517199 87 ntBASIC1.77□□□□□ -2.13
VPS28Q9UK41 AL353997.5-201ENST00000618886 171 ntBASIC1.77□□□□□ -2.13
VPS28Q9UK41 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
VPS28Q9UK41 MIR126-201ENST00000362291 85 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 RNU6-99P-201ENST00000364721 107 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 Y_RNA.474-201ENST00000384341 102 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 RNU6-950P-201ENST00000384651 107 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 RNU6-310P-201ENST00000384655 107 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 Y_RNA.577-201ENST00000384794 101 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 RNU6-1186P-201ENST00000410429 97 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 Y_RNA.646-201ENST00000410980 101 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 HSPE1P24-201ENST00000450782 238 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 MIR2053-201ENST00000459295 91 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 RNU6-559P-201ENST00000516151 98 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.76□□□□□ -2.13
VPS28Q9UK41 MIR3684-201ENST00000579779 74 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 MIR4422-201ENST00000581938 83 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 MIR4769-201ENST00000584126 77 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 MIR502-201ENST00000606349 86 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 AC025253.1-201ENST00000613623 543 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 U6.73-201ENST00000619194 103 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 U6.108-201ENST00000637764 58 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 WWP1P1-201ENST00000466609 2769 ntBASIC1.76□□□□□ -2.13
VPS28Q9UK41 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
VPS28Q9UK41 ICE2P2-201ENST00000483823 2787 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 RNA5SP99-201ENST00000364020 114 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 RNA5SP190-201ENST00000365222 118 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 SNORA4.2-201ENST00000365313 147 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 MIR625-201ENST00000385047 85 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 ELOCP21-201ENST00000412558 336 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 AC114482.1-201ENST00000418010 247 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 PCNPP5-201ENST00000452246 481 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 SNORD65B-201ENST00000459126 73 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 RNU7-34P-201ENST00000459394 64 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS28Q9UK41 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.75□□□□□ -2.13
VPS28Q9UK41 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS28Q9UK41 SUB1P3-201ENST00000564581 315 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS28Q9UK41 AC080078.3-201ENST00000605407 463 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 AL357075.2-201ENST00000614906 189 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 AC133104.2-201ENST00000615272 193 ntBASIC1.75□□□□□ -2.13
VPS28Q9UK41 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 Y_RNA.67-201ENST00000362870 100 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 RNU1-17P-201ENST00000363022 152 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 Y_RNA.142-201ENST00000363491 102 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 RNA5SP109-201ENST00000391010 116 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 Y_RNA.653-201ENST00000459091 95 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS28Q9UK41 AC022493.2-201ENST00000506122 481 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 AC010598.1-201ENST00000510378 103 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS28Q9UK41 RNU7-99P-201ENST00000516271 62 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.74□□□□□ -2.13
VPS28Q9UK41 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.74□□□□□ -2.13
VPS28Q9UK41 MIR3683-201ENST00000580847 82 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 AC005730.3-201ENST00000583067 366 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 MIR4438-201ENST00000585271 93 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 UBE2V2P2-201ENST00000587677 504 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 MIR8063-201ENST00000621930 81 ntBASIC1.74□□□□□ -2.13
VPS28Q9UK41 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
VPS28Q9UK41 AC073544.1-201ENST00000600110 1595 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 RNU6-890P-201ENST00000384121 107 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 RNU6-318P-201ENST00000384283 103 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 RNU6-1297P-201ENST00000384415 104 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 Y_RNA.498-201ENST00000384460 102 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 RNU6-482P-201ENST00000391068 107 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 RPL21P1-201ENST00000399532 476 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 AL161935.2-201ENST00000414627 60 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 MRPS10P1-201ENST00000448483 130 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms