Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU2-46P-201ENST00000517038 113 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AC025647.1-201ENST00000517879 253 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AF235103.2-201ENST00000525753 346 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AP000907.4-201ENST00000604143 237 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 Z84480.1-201ENST00000605131 311 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AL355073.2-201ENST00000612106 557 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.13□□□□□ -2.39
SCN3AQ9NY46 MIR6516-201ENST00000630554 81 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 Y_RNA.124-201ENST00000363339 93 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 RNU6-606P-201ENST00000384721 111 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 U8.16-201ENST00000391279 133 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AL049830.1-201ENST00000468034 425 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AC010469.2-201ENST00000496412 480 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.12□□□□□ -2.39
SCN3AQ9NY46 SNORA68.3-201ENST00000515906 83 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 RNU2-69P-201ENST00000516061 100 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AL162730.1-201ENST00000605734 292 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 RNU6-85P-201ENST00000605989 107 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AL138726.1-201ENST00000614873 333 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 AC027279.3-201ENST00000625055 122 ntBASIC0.12□□□□□ -2.39
SCN3AQ9NY46 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AP000568.1-201ENST00000282964 442 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 Y_RNA.336-201ENST00000365307 109 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 RNU6-376P-201ENST00000384731 106 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 Z98949.2-201ENST00000440996 144 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.11□□□□□ -2.39
SCN3AQ9NY46 SNORD65B-201ENST00000459126 73 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 RNU7-12P-201ENST00000516030 62 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 SCARNA24.1-201ENST00000516465 137 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.11□□□□□ -2.39
SCN3AQ9NY46 MIR4775-201ENST00000581168 75 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AC011458.1-201ENST00000604034 617 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 LARP7P1-201ENST00000605576 316 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 HULC.1-201ENST00000612720 240 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AC073349.3-201ENST00000617616 186 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 U6.73-201ENST00000619194 103 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 SCARNA4-201ENST00000629045 128 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 MTND4P12-201ENST00000498999 1377 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 MTND4P9-201ENST00000507819 1346 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 RNU4-66P-201ENST00000365199 138 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 RNU5E-5P-201ENST00000365379 116 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.11□□□□□ -2.39
SCN3AQ9NY46 MIR1185-2-201ENST00000408687 86 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AL606489.2-201ENST00000433886 234 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AC104850.1-201ENST00000435940 476 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 GMFBP1-201ENST00000467831 427 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC0.11□□□□□ -2.39
SCN3AQ9NY46 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.11□□□□□ -2.39
SCN3AQ9NY46 MIR4764-201ENST00000580680 88 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 SNORD11B-201ENST00000607707 90 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 AL133215.3-201ENST00000609801 448 ntBASIC0.11□□□□□ -2.39
SCN3AQ9NY46 SNORA9.1-201ENST00000362412 131 ntBASIC0.1□□□□□ -2.39
SCN3AQ9NY46 RNU4-67P-201ENST00000364569 141 ntBASIC0.1□□□□□ -2.39
SCN3AQ9NY46 Y_RNA.399-201ENST00000383955 105 ntBASIC0.1□□□□□ -2.39
SCN3AQ9NY46 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.1□□□□□ -2.39
SCN3AQ9NY46 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.1□□□□□ -2.39
SCN3AQ9NY46 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.1□□□□□ -2.39
SCN3AQ9NY46 AC011195.1-201ENST00000578177 177 ntBASIC0.1□□□□□ -2.39
SCN3AQ9NY46 MIR4305-201ENST00000583252 102 ntBASIC0.1□□□□□ -2.39
SCN3AQ9NY46 AC005562.2-201ENST00000618264 111 ntBASIC0.1□□□□□ -2.39
SCN3AQ9NY46 SNORA1B-201ENST00000362535 133 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 RNU5F-7P-201ENST00000363696 115 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 SNORD41-201ENST00000386967 70 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AL022718.1-201ENST00000412004 84 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AC004386.2-201ENST00000441858 148 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 snoU13.21-201ENST00000459368 105 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AC022493.2-201ENST00000506122 481 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 RNU6-1291P-201ENST00000516591 104 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 MTND4P7-201ENST00000523876 130 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AP002963.1-201ENST00000530590 184 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AP002004.2-201ENST00000531656 154 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.09□□□□□ -2.39
SCN3AQ9NY46 MIR3192-201ENST00000584920 77 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AP000811.1-201ENST00000603803 651 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AC016597.2-201ENST00000613256 341 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 AL078596.1-201ENST00000624856 447 ntBASIC0.09□□□□□ -2.39
SCN3AQ9NY46 RNA5SP264-201ENST00000363115 107 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 SNORA2A-201ENST00000383885 135 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.09□□□□□ -2.4
SCN3AQ9NY46 AL162725.1-201ENST00000435405 301 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 AC005002.2-201ENST00000438228 269 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 AC091133.4-201ENST00000511142 308 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 SNORA31.10-201ENST00000516482 106 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 AP003716.2-201ENST00000528260 108 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 AC025449.1-201ENST00000603896 529 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 AC064836.2-201ENST00000609491 462 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.09□□□□□ -2.4
SCN3AQ9NY46 RNU6-169P-201ENST00000365336 107 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNY1P8-201ENST00000383970 114 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNU6-125P-201ENST00000384505 107 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 MIR520C-201ENST00000385005 87 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 AC073261.1-201ENST00000429409 121 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 214.1 ms