Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SNORA40.19-201ENST00000390846 128 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 NDUFB4P4-201ENST00000404822 243 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 AL121890.1-201ENST00000435457 205 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 Z98949.2-201ENST00000440996 144 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 RPL39P40-201ENST00000445481 146 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.641-201ENST00000459414 105 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 COX6CP14-201ENST00000469580 174 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 AC073349.3-201ENST00000617616 186 ntBASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.87□□□□□ -1.95
TRIM39Q9HCM9 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 SNORA27.1-201ENST00000362604 124 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.117-201ENST00000363294 101 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 RNU6-407P-201ENST00000365280 104 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.341-201ENST00000365341 102 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.456-201ENST00000384232 111 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 RNU6-160P-201ENST00000384591 107 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 MIR1298-201ENST00000408783 112 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 RPL23AP7-203ENST00000449021 469 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.638-201ENST00000459374 113 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 AP001486.1-201ENST00000463339 476 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 SCARNA13-201ENST00000516672 275 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 AC136628.3-201ENST00000521868 290 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 MIR4643-201ENST00000577473 78 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 MIR4282-201ENST00000583613 67 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 AL137790.1-201ENST00000634283 177 ntBASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
TRIM39Q9HCM9 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 RNU6-1272P-201ENST00000362776 107 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 AL355796.1-201ENST00000406706 323 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 RN7SKP284-201ENST00000411002 343 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 COTL1P1-201ENST00000422309 375 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 HSPE1P13-201ENST00000451143 297 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 AP005660.1-201ENST00000522972 293 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 AC087441.2-201ENST00000529141 262 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 MIR3126-201ENST00000577443 74 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 LARP7P3-201ENST00000579888 337 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 AL161431.1-201ENST00000618966 4205 ntBASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.83-201ENST00000363005 113 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.199-201ENST00000364014 102 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 RNU1-91P-201ENST00000364746 163 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.287-201ENST00000364853 94 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.292-201ENST00000364904 97 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 Y_RNA.368-201ENST00000365547 113 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 BTF3P11-201ENST00000426582 477 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 AC107083.1-201ENST00000439643 279 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 AL138752.1-201ENST00000452964 351 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 SNORD2.1-201ENST00000458762 69 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 RPS26P55-201ENST00000471178 356 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 RNU6-138P-201ENST00000515952 107 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 AC027419.1-201ENST00000522976 328 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 AL137100.2-201ENST00000555786 315 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 AL078604.3-201ENST00000615580 211 ntBASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
TRIM39Q9HCM9 CENPCP1-201ENST00000533085 2578 ntBASIC2.84□□□□□ -1.96
TRIM39Q9HCM9 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 RNU1-35P-201ENST00000362782 153 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 Y_RNA.76-201ENST00000362931 109 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 AC025750.2-201ENST00000442609 450 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 RNU1-131P-201ENST00000458943 161 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 RPS27P22-201ENST00000478056 241 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 RNA5SP20-201ENST00000515976 84 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 RNU6-826P-201ENST00000516827 104 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 CYCSP26-201ENST00000534107 320 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 EIF4BP1-201ENST00000554881 351 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 AC130289.1-201ENST00000577321 73 ntBASIC2.83□□□□□ -1.96
TRIM39Q9HCM9 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 RNU6-1072P-201ENST00000384703 107 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 RNU6-443P-201ENST00000384780 107 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 RNU2-14P-201ENST00000411053 191 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 RNA5SP492-201ENST00000411330 114 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 AL139156.1-201ENST00000412785 841 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 CR769767.1-201ENST00000436337 346 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 RPS29P6-201ENST00000438196 145 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 AL135938.1-201ENST00000443141 297 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 AP004217.1-201ENST00000480579 346 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 RNA5SP76-201ENST00000516277 87 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 RNA5SP367-201ENST00000516557 118 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 SUMO2P18-201ENST00000518873 252 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 AC006386.2-201ENST00000624491 75 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 AC012005.1-201ENST00000624575 75 ntBASIC2.82□□□□□ -1.96
TRIM39Q9HCM9 snoU18.1-201ENST00000629629 71 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms