Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 MIR4513-201ENST00000581077 86 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 MIR411-201ENST00000362239 96 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.124-201ENST00000363339 93 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 MIR592-201ENST00000384959 97 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 AL355796.1-201ENST00000406706 323 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.626-201ENST00000411288 95 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 AC009310.1-201ENST00000414414 451 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 BTF3P11-201ENST00000426582 477 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.638-201ENST00000459374 113 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 RN7SKP40-201ENST00000517211 242 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 AL008718.3-201ENST00000610217 321 ntBASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
PCIF1Q9H4Z3 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 AC062016.1-201ENST00000355719 319 ntBASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-859P-201ENST00000362728 107 ntBASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 AC092427.1-202ENST00000430569 476 ntBASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 AL137159.1-201ENST00000452808 512 ntBASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-667P-201ENST00000517186 102 ntBASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 AC025754.2-201ENST00000606491 432 ntBASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 snoU18.1-201ENST00000629629 71 ntBASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.85□□□□□ -1.95
PCIF1Q9H4Z3 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 FAM35CP-201ENST00000554755 2470 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.332-201ENST00000365271 113 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 SNORA20B-201ENST00000384220 132 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-1235P-201ENST00000384559 107 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 MIR196B-201ENST00000384852 84 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 MIR561-201ENST00000385216 97 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-1248P-201ENST00000391096 64 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 SNORA11.2-201ENST00000408318 127 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 MIR548I3-201ENST00000408378 149 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 MIR548I1-201ENST00000408810 149 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 AC016909.1-201ENST00000415916 166 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 AC024067.1-201ENST00000426199 223 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 AC063976.3-201ENST00000426849 329 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-498P-201ENST00000459468 107 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 COX6CP14-201ENST00000469580 174 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 AC093259.1-201ENST00000509755 300 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 AC096725.1-201ENST00000514266 313 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-948P-201ENST00000516374 107 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 AC013412.1-201ENST00000610687 192 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 AC073349.3-201ENST00000617616 186 ntBASIC2.84□□□□□ -1.95
PCIF1Q9H4Z3 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 MIR340-201ENST00000362125 95 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.29-201ENST00000362570 113 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 SNORA25B-201ENST00000365507 128 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-211P-201ENST00000384047 107 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-763P-201ENST00000390865 106 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 PIGPP3-201ENST00000425307 415 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 AL121890.1-201ENST00000435457 205 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 MTCO1P44-201ENST00000441935 243 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 UBBP3-201ENST00000445497 241 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 AC104389.3-201ENST00000445629 235 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 SUMO1P2-201ENST00000452524 304 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 AL109933.2-201ENST00000452651 260 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 RN7SL499P-201ENST00000481141 276 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 SNORA31.26-201ENST00000517250 137 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 AC025647.1-201ENST00000517879 253 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 AC024405.2-202ENST00000532731 184 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 CBX3P4-201ENST00000538909 354 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 AC009127.3-201ENST00000570531 403 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 MIR3684-201ENST00000579779 74 ntBASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.83□□□□□ -1.96
PCIF1Q9H4Z3 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 AC009487.4-201ENST00000624969 3585 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-801P-201ENST00000364087 105 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-855P-201ENST00000410395 104 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-710P-201ENST00000410424 105 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 RNA5SP184-201ENST00000411071 108 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 AC123900.1-201ENST00000420390 96 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 RPL23AP7-203ENST00000449021 469 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 PRELID3BP1-201ENST00000457142 540 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.644-201ENST00000459006 113 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 SNORD65B-201ENST00000459126 73 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.637-201ENST00000459424 114 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 Y_RNA.674-201ENST00000516362 113 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 RNU2-34P-201ENST00000516534 121 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 RNU6-182P-201ENST00000516970 105 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 AC007536.1-201ENST00000533382 349 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 AC098479.1-201ENST00000609225 154 ntBASIC2.82□□□□□ -1.96
PCIF1Q9H4Z3 AC004792.1-201ENST00000614523 137 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms