Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC019288.1-201ENST00000557918 224 ntBASIC1.21□□□□□ -2.22
VPS35Q96QK1 MZT1P2-201ENST00000604387 248 ntBASIC1.21□□□□□ -2.22
VPS35Q96QK1 AL050343.2-201ENST00000607338 280 ntBASIC1.21□□□□□ -2.22
VPS35Q96QK1 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.21□□□□□ -2.22
VPS35Q96QK1 U4.5-201ENST00000617137 123 ntBASIC1.21□□□□□ -2.22
VPS35Q96QK1 U6.73-201ENST00000619194 103 ntBASIC1.21□□□□□ -2.22
VPS35Q96QK1 MIR8054-201ENST00000620877 86 ntBASIC1.21□□□□□ -2.22
VPS35Q96QK1 MIR3662-201ENST00000637030 95 ntBASIC1.21□□□□□ -2.22
VPS35Q96QK1 Y_RNA.318-201ENST00000365131 97 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 Y_RNA.490-201ENST00000384413 102 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 Y_RNA.516-201ENST00000384541 124 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 RN7SKP200-201ENST00000410564 320 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 RPL23AP36-201ENST00000413895 458 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 USMG5P1-201ENST00000425964 177 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.2□□□□□ -2.22
VPS35Q96QK1 MTND3P23-201ENST00000431980 347 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 AC108729.3-201ENST00000513484 108 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 RNU6-1114P-201ENST00000516022 107 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 RNU6-566P-201ENST00000516790 107 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 APOOP3-201ENST00000536787 586 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 AL390123.1-201ENST00000603216 237 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 AC010999.1-201ENST00000611856 324 ntBASIC1.2□□□□□ -2.22
VPS35Q96QK1 Y_RNA.184-201ENST00000363884 108 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 Y_RNA.327-201ENST00000365201 102 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
VPS35Q96QK1 MRPL42P3-201ENST00000401492 326 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.19□□□□□ -2.22
VPS35Q96QK1 USP9YP30-201ENST00000430729 455 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.19□□□□□ -2.22
VPS35Q96QK1 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.19□□□□□ -2.22
VPS35Q96QK1 RPS29P25-201ENST00000481709 171 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.19□□□□□ -2.22
VPS35Q96QK1 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.19□□□□□ -2.22
VPS35Q96QK1 RN7SKP179-201ENST00000516126 217 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 RNU7-99P-201ENST00000516271 62 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 Y_RNA.706-201ENST00000516933 99 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 SUMO2P16-201ENST00000519475 264 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 AL355802.3-201ENST00000607571 545 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 MIR6078-201ENST00000611069 100 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 AC093913.1-201ENST00000614178 329 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 MIR6128-201ENST00000615528 109 ntBASIC1.19□□□□□ -2.22
VPS35Q96QK1 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
VPS35Q96QK1 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
VPS35Q96QK1 RNU6-222P-201ENST00000362438 107 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 RNU6-392P-201ENST00000364926 101 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 Y_RNA.338-201ENST00000365320 114 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 Y_RNA.453-201ENST00000384223 109 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 RNU6-842P-201ENST00000384269 107 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 RNU1-139P-201ENST00000391307 165 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 AL356776.1-201ENST00000406574 447 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 RNU6-321P-201ENST00000410912 106 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 AL139396.1-201ENST00000421137 167 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.18□□□□□ -2.22
VPS35Q96QK1 USP9YP16-201ENST00000430287 407 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 USP9YP23-201ENST00000455085 407 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 Y_RNA.683-201ENST00000516508 93 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 AC091144.1-201ENST00000519573 138 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 AC004584.2-201ENST00000570407 410 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 MIR4438-201ENST00000585271 93 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 BNIP3P10-201ENST00000605360 577 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 AC100812.1-201ENST00000607622 580 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 MIR3688-2-201ENST00000636963 87 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 AC068137.4-201ENST00000638485 296 ntBASIC1.18□□□□□ -2.22
VPS35Q96QK1 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
VPS35Q96QK1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
VPS35Q96QK1 RNA5SP327-201ENST00000362494 101 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 Y_RNA.48-201ENST00000362710 103 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
VPS35Q96QK1 SNORA12.1-201ENST00000390873 148 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 RNU6-440P-201ENST00000390882 105 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 SNORD115-47-201ENST00000391226 86 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.17□□□□□ -2.22
VPS35Q96QK1 TOMM22P2-201ENST00000430735 237 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 PGBD4P5-201ENST00000445958 426 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 MRPS10P1-201ENST00000448483 130 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 RNU6-107P-201ENST00000516643 102 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 RN7SKP88-201ENST00000516847 250 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 AC027419.1-201ENST00000522976 328 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 AC090821.2-201ENST00000523552 176 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 MIR4790-201ENST00000577799 79 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 MIR3664-201ENST00000579074 99 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 7SK.8-201ENST00000612110 250 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 7SK.11-201ENST00000615477 250 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 MIR8065-201ENST00000620577 100 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 7SK.13-201ENST00000622040 250 ntBASIC1.17□□□□□ -2.22
VPS35Q96QK1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
VPS35Q96QK1 Y_RNA.301-201ENST00000364990 103 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 AL034345.1-201ENST00000407768 123 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 SNORD5.1-201ENST00000458800 75 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 SNORD65B-201ENST00000459126 73 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 RNU7-94P-201ENST00000459576 63 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 RPS27P22-201ENST00000478056 241 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 RNU6-1053P-201ENST00000515930 101 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 RNU4-49P-201ENST00000516080 140 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 CBX3P8-201ENST00000532412 525 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 AC023157.2-201ENST00000540596 141 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 AC093023.1-201ENST00000547375 507 ntBASIC1.16□□□□□ -2.22
VPS35Q96QK1 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.16□□□□□ -2.22
VPS35Q96QK1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.15□□□□□ -2.22
VPS35Q96QK1 Y_RNA.106-201ENST00000363189 100 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 193.8 ms