Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC009969.1-201ENST00000438726 172 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 AL109933.2-201ENST00000452651 260 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 SCARNA8-201ENST00000515924 131 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 AC115990.1-201ENST00000526957 301 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.95□□□□□ -1.94
USP39Q53GS9 MIR4744-201ENST00000581563 82 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 MIR3136-201ENST00000583498 78 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 AC006380.1-201ENST00000603598 186 ntBASIC2.95□□□□□ -1.94
USP39Q53GS9 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
USP39Q53GS9 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
USP39Q53GS9 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
USP39Q53GS9 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
USP39Q53GS9 RNU6-324P-201ENST00000363957 106 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 RNU4-11P-201ENST00000365287 132 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SNORA9.2-201ENST00000365361 133 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SNORD116-14-201ENST00000383894 92 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SNORD116-17-201ENST00000383929 92 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SNORD116-15-201ENST00000384445 92 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SNORA20-201ENST00000384662 132 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SNORD116-19-201ENST00000384729 92 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 RNA5SP354-201ENST00000391247 136 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 RNA5SP504-201ENST00000410676 117 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 RNA5SP508-201ENST00000411327 119 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 AL035461.1-201ENST00000421490 332 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.94□□□□□ -1.94
USP39Q53GS9 EEF1B2P7-201ENST00000451177 676 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 RNU6-1333P-201ENST00000516162 93 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SNORA25.12-201ENST00000516202 82 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 DNAJC19P2-201ENST00000593340 302 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SNRPGP20-201ENST00000604477 205 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 MIR6715A-201ENST00000615929 79 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.94□□□□□ -1.94
USP39Q53GS9 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.94□□□□□ -1.94
USP39Q53GS9 AC010329.5-201ENST00000623497 2174 ntBASIC2.94□□□□□ -1.94
USP39Q53GS9 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
USP39Q53GS9 AC134026.1-201ENST00000623249 2239 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
USP39Q53GS9 Y_RNA.40-201ENST00000362645 93 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 RNU6-1048P-201ENST00000364054 107 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 AL031003.1-201ENST00000404229 172 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 RNA5SP274-201ENST00000410484 108 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.93□□□□□ -1.94
USP39Q53GS9 AC108938.1-201ENST00000451204 136 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 RPL31P41-201ENST00000477967 372 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 RNU6-453P-201ENST00000516819 85 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 RNU6-1234P-201ENST00000516877 103 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.93□□□□□ -1.94
USP39Q53GS9 HMGN2P15-201ENST00000585707 270 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 AC073308.1-201ENST00000623696 305 ntBASIC2.93□□□□□ -1.94
USP39Q53GS9 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
USP39Q53GS9 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
USP39Q53GS9 AC008264.2-201ENST00000610193 3731 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 AC073325.2-201ENST00000339545 159 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 RNU6-529P-201ENST00000363383 104 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 RNU6-103P-201ENST00000363686 107 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 SNORD87-201ENST00000364849 89 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 RNU6-1180P-201ENST00000364935 107 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 SNORA72.4-201ENST00000384174 132 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 SNORA26.7-201ENST00000391288 122 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 AC023141.4-201ENST00000412031 328 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 RPL30P13-201ENST00000418873 348 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 AC244505.4-201ENST00000434905 287 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 SSXP5-201ENST00000443473 287 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 AC012308.1-201ENST00000451232 178 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 RNU7-197P-201ENST00000458836 62 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 RPS27P26-201ENST00000494583 239 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.92□□□□□ -1.94
USP39Q53GS9 AC107027.2-201ENST00000512197 115 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 AC109810.1-201ENST00000534066 224 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.92□□□□□ -1.94
USP39Q53GS9 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.92□□□□□ -1.94
USP39Q53GS9 MIR3923-201ENST00000579521 83 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.92□□□□□ -1.94
USP39Q53GS9 AL034555.1-201ENST00000604816 211 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 PCGEM1.1-201ENST00000613431 131 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 AC008873.1-201ENST00000625051 138 ntBASIC2.92□□□□□ -1.94
USP39Q53GS9 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.92□□□□□ -1.94
USP39Q53GS9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USP39Q53GS9 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.92□□□□□ -1.94
USP39Q53GS9 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.91□□□□□ -1.94
USP39Q53GS9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
USP39Q53GS9 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
USP39Q53GS9 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
USP39Q53GS9 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
USP39Q53GS9 Y_RNA.172-201ENST00000363765 102 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 Y_RNA.243-201ENST00000364481 109 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 MIR627-201ENST00000384979 97 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.91□□□□□ -1.94
USP39Q53GS9 AL714022.1-201ENST00000439897 151 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 AL161651.1-201ENST00000440882 223 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 AC074290.1-201ENST00000448883 135 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 SNORD109B-201ENST00000458961 67 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 SNORD109A-201ENST00000459128 67 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 RNU7-23P-201ENST00000459465 62 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 RN7SL633P-201ENST00000488974 297 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.91□□□□□ -1.94
USP39Q53GS9 RNU6-919P-201ENST00000516731 104 ntBASIC2.91□□□□□ -1.94
USP39Q53GS9 AC079600.2-201ENST00000550076 130 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 155.1 ms