Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR4315-2-201ENST00000640925 73 ntBASIC0.24□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-715P-201ENST00000365204 103 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 MIR122-201ENST00000385044 85 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 SNORA12.1-201ENST00000390873 148 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 SNORA75.2-201ENST00000391138 150 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 SNORA75.3-201ENST00000391231 150 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 MRPL42P3-201ENST00000401492 326 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 AL049545.1-201ENST00000401856 572 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 MTCYBP10-201ENST00000424905 650 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 AC104850.1-201ENST00000435940 476 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 SNORA31.10-201ENST00000516482 106 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 SCOCP1-201ENST00000554676 349 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 MIR4305-201ENST00000583252 102 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 MIR4438-201ENST00000585271 93 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 AC122133.1-201ENST00000613964 233 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 7SK.10-201ENST00000621414 298 ntBASIC0.23□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-1214P-201ENST00000363650 109 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AL034345.1-201ENST00000407768 123 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 RPL23AP50-201ENST00000434149 455 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AC104332.1-201ENST00000440471 797 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AC025465.4-201ENST00000513422 638 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 RNU7-28P-201ENST00000516759 62 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 MRPS36P3-201ENST00000519284 130 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 MTND4P7-201ENST00000523876 130 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AC068790.2-201ENST00000602601 557 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 Z84480.1-201ENST00000605131 311 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AC006001.4-201ENST00000622243 395 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 ZNF204P-201ENST00000416749 2397 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 SNORD114-7-201ENST00000362520 77 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-280P-201ENST00000364145 104 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 RNU4-66P-201ENST00000365199 138 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AL031274.1-201ENST00000450334 232 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AC091874.1-201ENST00000511402 339 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 RNU6-1110P-201ENST00000516462 101 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 MTCO2P4-201ENST00000517968 247 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AC025423.5-201ENST00000550230 219 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 AC005609.4-201ENST00000625071 447 ntBASIC0.22□□□□□ -2.37
CCDC88AQ3V6T2 SNORA2.2-201ENST00000365473 135 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 SNORA36A-201ENST00000384221 132 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 U8.16-201ENST00000391279 133 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 AL008987.1-201ENST00000415528 237 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 MTND4P18-201ENST00000447010 465 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 OR9P1P-201ENST00000496431 281 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-323P-201ENST00000521915 107 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 AC027288.2-201ENST00000553028 243 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 SNORD11B-201ENST00000607707 90 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.21□□□□□ -2.38
CCDC88AQ3V6T2 RNU5F-3P-201ENST00000363767 117 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 Y_RNA.303-201ENST00000364998 94 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 Y_RNA.330-201ENST00000365230 109 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNA5SP109-201ENST00000391010 116 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-195P-201ENST00000411352 109 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 TIMM9P3-201ENST00000428659 274 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RPEP5-201ENST00000441137 268 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNU7-12P-201ENST00000516030 62 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 FAM157A-202ENST00000615155 405 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AC005562.2-201ENST00000618264 111 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 MIR6516-201ENST00000630554 81 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-1305P-201ENST00000364353 104 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-348P-201ENST00000384386 107 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-933P-201ENST00000384424 107 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RPS3AP1-201ENST00000413190 320 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AC098592.1-201ENST00000419352 333 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 MTND3P9-201ENST00000429526 346 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AL009048.1-201ENST00000450437 298 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 TPT1P7-201ENST00000458300 517 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-863P-201ENST00000515989 104 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-1278P-201ENST00000516130 107 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 SCARNA24.1-201ENST00000516465 137 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AL358944.1-201ENST00000528537 144 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 MTND1P8-201ENST00000571424 950 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 MIR3192-201ENST00000584920 77 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AC091304.9-201ENST00000612091 226 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 HULC.1-201ENST00000612720 240 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 AL078596.1-201ENST00000624856 447 ntBASIC0.2□□□□□ -2.38
CCDC88AQ3V6T2 SNORA33-201ENST00000363664 130 ntBASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 MTND2P9-201ENST00000422293 931 ntBASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 AC004386.2-201ENST00000441858 148 ntBASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 RNU7-167P-201ENST00000459160 62 ntBASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-341P-201ENST00000516973 96 ntBASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 RNA5SP454-201ENST00000517231 127 ntBASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 RNU6-85P-201ENST00000605989 107 ntBASIC0.19□□□□□ -2.38
CCDC88AQ3V6T2 AC087588.2-201ENST00000617667 426 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 211.9 ms