Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RN7SKP295-201ENST00000517264 153 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 SNORA4-201ENST00000584302 138 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 AC005786.1-201ENST00000588553 154 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 SNORD58B-201ENST00000607313 66 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 AC083806.3-201ENST00000614016 455 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 AL357075.2-201ENST00000614906 189 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.06□□□□□ -2.08
COL28A1Q2UY09 AL596028.1-201ENST00000326971 197 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.138-201ENST00000363462 102 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 RNU6-457P-201ENST00000363999 107 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.526-201ENST00000384572 110 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
COL28A1Q2UY09 SNORD78.2-201ENST00000391076 69 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 MRPL35P1-201ENST00000404272 572 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 MIR1302-11-201ENST00000408051 138 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 MIR1302-9-201ENST00000408365 138 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 MIR1302-10-201ENST00000408734 138 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.05□□□□□ -2.08
COL28A1Q2UY09 AC112492.4-201ENST00000456549 352 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 SNORA40.9-201ENST00000515895 93 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 RNU6-1012P-201ENST00000516606 109 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 RNA5SP480-201ENST00000516840 109 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 AC018448.1-201ENST00000552843 316 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 MIR5188-201ENST00000583467 113 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 MIR1302-2-201ENST00000607096 138 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 AC006157.1-201ENST00000611750 366 ntBASIC2.05□□□□□ -2.08
COL28A1Q2UY09 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.28-201ENST00000362554 111 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.80-201ENST00000362996 102 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 RNU11-3P-201ENST00000391111 133 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 SNORA40.18-201ENST00000391200 128 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 AC008134.1-201ENST00000420943 193 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 SDAD1P3-201ENST00000427380 333 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 AL160004.2-201ENST00000432935 350 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 MTCYBP6-201ENST00000441810 138 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 FCF1P4-201ENST00000448326 183 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 AC016717.1-201ENST00000448918 286 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 SNORA25.10-201ENST00000515926 124 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.711-201ENST00000516993 102 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 SUMO2P18-201ENST00000518873 252 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.04□□□□□ -2.08
COL28A1Q2UY09 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.04□□□□□ -2.08
COL28A1Q2UY09 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.04□□□□□ -2.08
COL28A1Q2UY09 AC044792.1-201ENST00000593294 196 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 AL159152.1-201ENST00000635019 2587 ntBASIC2.04□□□□□ -2.08
COL28A1Q2UY09 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.03□□□□□ -2.08
COL28A1Q2UY09 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.08
COL28A1Q2UY09 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
COL28A1Q2UY09 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.31-201ENST00000362574 102 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 RNU6-1227P-201ENST00000383981 107 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 Y_RNA.540-201ENST00000384638 111 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 AC019129.1-201ENST00000403786 261 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 RNU6-57P-201ENST00000411348 103 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 AC096644.2-201ENST00000429278 159 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 AL445646.1-201ENST00000431784 216 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 AC025647.1-201ENST00000517879 253 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 RNU6-988P-201ENST00000519081 107 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 AC020661.2-201ENST00000560114 134 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 MIR3684-201ENST00000579779 74 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 AC007229.1-201ENST00000590455 412 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 AC007485.1-201ENST00000616755 206 ntBASIC2.03□□□□□ -2.08
COL28A1Q2UY09 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
COL28A1Q2UY09 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.09
COL28A1Q2UY09 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.09
COL28A1Q2UY09 AC008555.8-201ENST00000623602 2168 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 Y_RNA.148-201ENST00000363557 117 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 AC060773.1-201ENST00000421698 310 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 IPO7P1-201ENST00000442031 636 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 ATP5J2P3-201ENST00000451550 258 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 RPL26P26-201ENST00000480251 434 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.02□□□□□ -2.09
COL28A1Q2UY09 RPL23AP63-201ENST00000498752 471 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 AC002984.1-201ENST00000591692 448 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 AC010205.1-201ENST00000616668 449 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 AC009831.4-201ENST00000620744 325 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 MIR6132-201ENST00000622083 109 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 AC022513.1-201ENST00000624512 117 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 U6.92-201ENST00000636464 89 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 AC005592.1-201ENST00000566527 1640 ntBASIC2.02□□□□□ -2.09
COL28A1Q2UY09 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 SNORA16B-201ENST00000364674 135 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 AC117470.1-201ENST00000381974 330 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 Y_RNA.498-201ENST00000384460 102 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 MIR597-201ENST00000384968 97 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 SNORA48.1-201ENST00000390879 135 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 RNU6-625P-201ENST00000459412 107 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 AC011406.1-201ENST00000512440 370 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.15-201ENST00000611544 191 ntBASIC2.01□□□□□ -2.09
COL28A1Q2UY09 U2.16-201ENST00000613119 191 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms