Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNU2-40P-201ENST00000410833 196 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 MTCO3P19-201ENST00000415864 321 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.21□□□□□ -2.06
HDAC4P56524 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.21□□□□□ -2.06
HDAC4P56524 RPEP5-201ENST00000441137 268 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 AL118496.2-201ENST00000448300 230 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 SNORA40.9-201ENST00000515895 93 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 RNU1-117P-201ENST00000517041 158 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 AC022616.4-201ENST00000522985 181 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 MIR7111-201ENST00000619751 72 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 AC068205.3-201ENST00000636385 468 ntBASIC2.21□□□□□ -2.06
HDAC4P56524 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
HDAC4P56524 Y_RNA.332-201ENST00000365271 113 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 Y_RNA.389-201ENST00000383924 113 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 RNU6-926P-201ENST00000384075 107 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 Y_RNA.455-201ENST00000384230 98 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 MIR518A2-201ENST00000384966 87 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 AL023284.1-201ENST00000403956 276 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 MIR1283-1-201ENST00000408494 87 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 SNORA11.4-201ENST00000408823 129 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.2□□□□□ -2.06
HDAC4P56524 Y_RNA.715-201ENST00000517082 110 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.2□□□□□ -2.06
HDAC4P56524 AC055872.1-201ENST00000570978 278 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 MIR4659A-201ENST00000580269 81 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 MIR4753-201ENST00000585119 83 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 AC006504.6-201ENST00000590142 199 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 AC124312.5-201ENST00000604451 268 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 RAC1P9-201ENST00000604990 392 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 AC240442.1-201ENST00000616055 283 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 AC010205.1-201ENST00000616668 449 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 uc_338.20-201ENST00000621563 178 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 MIR6873-201ENST00000622788 63 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 AL078596.1-201ENST00000624856 447 ntBASIC2.2□□□□□ -2.06
HDAC4P56524 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
HDAC4P56524 Y_RNA.422-201ENST00000384054 114 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 Y_RNA.424-201ENST00000384063 103 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 SNORA64-201ENST00000384674 134 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 MIR586-201ENST00000385035 97 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 MIR548B-201ENST00000385247 97 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 Y_RNA.595-201ENST00000410403 105 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 AC123900.1-201ENST00000420390 96 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 MTND2P23-201ENST00000422990 651 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 SDAD1P3-201ENST00000427380 333 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 AC114982.1-201ENST00000469402 321 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 AC067942.3-201ENST00000512025 362 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 RNU6-764P-201ENST00000516396 105 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.19□□□□□ -2.06
HDAC4P56524 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.19□□□□□ -2.06
HDAC4P56524 MIR4287-201ENST00000579398 78 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.19□□□□□ -2.06
HDAC4P56524 AC092881.1-201ENST00000638218 2733 ntBASIC2.19□□□□□ -2.06
HDAC4P56524 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
HDAC4P56524 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
HDAC4P56524 Y_RNA.164-201ENST00000363709 102 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 SNORD78.2-201ENST00000391076 69 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 MRPL35P1-201ENST00000404272 572 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 MIR1252-201ENST00000408861 65 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 MTCO1P44-201ENST00000441935 243 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 AC074290.1-201ENST00000448883 135 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 PCNPP5-201ENST00000452246 481 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 AC010531.2-201ENST00000465012 153 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 AC010655.3-201ENST00000478818 450 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 RNU6-1046P-201ENST00000516538 107 ntBASIC2.18□□□□□ -2.06
HDAC4P56524 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.18□□□□□ -2.06
HDAC4P56524 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
HDAC4P56524 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.17□□□□□ -2.06
HDAC4P56524 Y_RNA.162-201ENST00000363683 102 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 Y_RNA.226-201ENST00000364337 114 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 RNU6-1305P-201ENST00000364353 104 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 SNORA67.3-201ENST00000384366 140 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 RNU6-160P-201ENST00000384591 107 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 Y_RNA.551-201ENST00000384661 102 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 AL079342.1-201ENST00000401460 267 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 AL139156.1-201ENST00000412785 841 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 FCF1P4-201ENST00000448326 183 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 Y_RNA.721-201ENST00000517207 102 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 AC087441.2-201ENST00000529141 262 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 AC018448.1-201ENST00000552843 316 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 AC008749.1-201ENST00000597650 306 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 AL390123.1-201ENST00000603216 237 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 AL121655.1-201ENST00000605811 308 ntBASIC2.17□□□□□ -2.06
HDAC4P56524 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.17□□□□□ -2.06
HDAC4P56524 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.17□□□□□ -2.06
HDAC4P56524 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.17□□□□□ -2.06
HDAC4P56524 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 Y_RNA.105-201ENST00000363182 111 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 Y_RNA.145-201ENST00000363527 102 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 RNU4-50P-201ENST00000364361 141 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 Y_RNA.471-201ENST00000384312 102 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 RNU6-101P-201ENST00000410323 104 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 RNA5SP450-201ENST00000411206 102 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.16□□□□□ -2.06
HDAC4P56524 UQCRBP2-201ENST00000447827 297 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 AC016717.1-201ENST00000448918 286 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 AC074133.1-201ENST00000515696 183 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 RNU6-408P-201ENST00000515910 100 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 RNU6-327P-201ENST00000516270 127 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 RNU6-966P-201ENST00000516479 104 ntBASIC2.16□□□□□ -2.06
HDAC4P56524 Y_RNA.720-201ENST00000517166 92 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms