Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
FOXA1P55317 MTCO3P18-201ENST00000440206 761 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 PGBD4P5-201ENST00000445958 426 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.76□□□□□ -2.29
FOXA1P55317 HMGN2P26-201ENST00000463169 339 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.76□□□□□ -2.29
FOXA1P55317 AK6P2-201ENST00000549020 471 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 AC027288.2-201ENST00000553028 243 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.76□□□□□ -2.29
FOXA1P55317 MIR3664-201ENST00000579074 99 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 POLR3GP2-201ENST00000588366 668 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 AL138726.1-201ENST00000614873 333 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.76□□□□□ -2.29
FOXA1P55317 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.76□□□□□ -2.29
FOXA1P55317 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
FOXA1P55317 AL391516.1-201ENST00000554380 2449 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 MTND4P12-201ENST00000498999 1377 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 RNU6-873P-201ENST00000363833 107 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 Y_RNA.256-201ENST00000364594 104 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 MIR517A-201ENST00000385001 87 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 MIR153-2-201ENST00000385225 87 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 RNU6-1186P-201ENST00000410429 97 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA1P55317 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.75□□□□□ -2.29
FOXA1P55317 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.75□□□□□ -2.29
FOXA1P55317 MTND1P29-201ENST00000448112 647 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA1P55317 RNU7-66P-201ENST00000459469 62 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA1P55317 Y_RNA.670-201ENST00000516255 105 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 RNU7-128P-201ENST00000517247 62 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA1P55317 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.75□□□□□ -2.29
FOXA1P55317 MIR6857-201ENST00000613267 93 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.75□□□□□ -2.29
FOXA1P55317 Y_RNA.38-201ENST00000362617 102 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 RNU6-451P-201ENST00000362921 107 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 RNU6-727P-201ENST00000363592 107 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 U3.8-201ENST00000363675 217 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.74□□□□□ -2.29
FOXA1P55317 MIR613-201ENST00000385248 95 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 MIR1185-2-201ENST00000408687 86 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 RNU2-16P-201ENST00000410712 136 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.74□□□□□ -2.29
FOXA1P55317 AC245047.3-201ENST00000429428 127 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 DAP3P1-201ENST00000441522 278 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 RPL30P10-201ENST00000488148 337 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 TRBVA-201ENST00000498804 316 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 UBL5P1-201ENST00000507979 193 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 RNA5SP436-201ENST00000516020 115 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 RNU6-256P-201ENST00000516747 97 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 RNU6-1198P-201ENST00000516904 67 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.74□□□□□ -2.29
FOXA1P55317 FRG2DP-202ENST00000566967 323 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 AL390123.1-201ENST00000603216 237 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 AC211469.2-201ENST00000605461 205 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.74□□□□□ -2.29
FOXA1P55317 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 PVT1_3.1-201ENST00000620853 95 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 MIR8054-201ENST00000620877 86 ntBASIC0.74□□□□□ -2.29
FOXA1P55317 Y_RNA.135-201ENST00000363439 95 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 Y_RNA.415-201ENST00000384012 112 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 Y_RNA.530-201ENST00000384587 101 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 RNU6-541P-201ENST00000384709 110 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 MIR146A-201ENST00000385201 99 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
FOXA1P55317 SNORA12.1-201ENST00000390873 148 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 RNU6-440P-201ENST00000390882 105 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 RN7SKP200-201ENST00000410564 320 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 RPL30P16-201ENST00000419341 429 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 MTND1P1-201ENST00000445453 368 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.73□□□□□ -2.29
FOXA1P55317 NDUFB4P10-201ENST00000452541 359 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 AC091179.3-201ENST00000474761 144 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 ACA59.1-201ENST00000515966 143 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.73□□□□□ -2.29
FOXA1P55317 UBL5P4-201ENST00000562584 236 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 MIR3672-201ENST00000584290 82 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 PIGPP4-201ENST00000584447 307 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 NBR2-204ENST00000587322 63 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 U6.73-201ENST00000619194 103 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 AC009248.2-201ENST00000619826 254 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.73□□□□□ -2.29
FOXA1P55317 AC068647.2-201ENST00000637380 353 ntBASIC0.73□□□□□ -2.29
FOXA1P55317 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.73□□□□□ -2.29
FOXA1P55317 RNU6-137P-201ENST00000363680 108 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 RNY3P3-201ENST00000363816 102 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 MIR7-2-201ENST00000384970 110 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 RNU6-159P-201ENST00000391080 106 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 RNU6-332P-201ENST00000391193 108 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 RNU11-5P-201ENST00000391216 129 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 MRPL42P3-201ENST00000401492 326 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 ZNF885P-201ENST00000420174 1098 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.72□□□□□ -2.29
FOXA1P55317 RPL39P38-201ENST00000467018 153 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 RNA5SP480-201ENST00000516840 109 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 RNA5SP404-201ENST00000517118 132 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 RNU6-165P-201ENST00000517170 99 ntBASIC0.72□□□□□ -2.29
FOXA1P55317 MTND2P38-201ENST00000522536 667 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms