Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RNU4-79P-201ENST00000362764 141 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 SNORD115-8-201ENST00000363856 82 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 SNORD115-38-201ENST00000365037 82 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 RNU6-245P-201ENST00000384020 107 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 RN7SL274P-201ENST00000492268 272 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.6□□□□□ -2.15
TNFRSF4P43489 AC105758.1-201ENST00000506038 399 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.6□□□□□ -2.15
TNFRSF4P43489 RNU6-470P-201ENST00000515954 104 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 RNA5SP364-201ENST00000516938 78 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 AC080078.3-201ENST00000605407 463 ntBASIC1.6□□□□□ -2.15
TNFRSF4P43489 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.6□□□□□ -2.15
TNFRSF4P43489 MTND5P10-201ENST00000603719 1809 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-862P-201ENST00000362804 105 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 Y_RNA.146-201ENST00000363549 102 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-727P-201ENST00000363592 107 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-112P-201ENST00000363599 104 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-137P-201ENST00000363680 108 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU5F-3P-201ENST00000363767 117 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-1305P-201ENST00000364353 104 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 Y_RNA.358-201ENST00000365491 99 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 Y_RNA.364-201ENST00000365532 101 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 MIR10B-201ENST00000385011 110 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 MIR625-201ENST00000385047 85 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 MIR30A-201ENST00000385092 71 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-159P-201ENST00000391080 106 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 MIR1287-201ENST00000408492 90 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-1156P-201ENST00000410365 100 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 AC004866.1-201ENST00000411748 78 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.59□□□□□ -2.15
TNFRSF4P43489 EBAG9P1-201ENST00000418955 543 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 HSPE1P21-201ENST00000438283 308 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 AC009474.2-201ENST00000451383 136 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 AC008834.1-201ENST00000511612 175 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-1114P-201ENST00000516022 107 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU6-1041P-201ENST00000516254 102 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.59□□□□□ -2.15
TNFRSF4P43489 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.59□□□□□ -2.15
TNFRSF4P43489 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.59□□□□□ -2.15
TNFRSF4P43489 MIR4448-201ENST00000584360 86 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 BX248123.2-201ENST00000606318 124 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 SNORD11B-201ENST00000607707 90 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 AC104985.2-201ENST00000620598 500 ntBASIC1.59□□□□□ -2.15
TNFRSF4P43489 RNU1-96P-201ENST00000364163 162 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 RNU6-879P-201ENST00000364328 108 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 Y_RNA.314-201ENST00000365114 102 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 RNU6-1040P-201ENST00000383974 107 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 RNU6-1235P-201ENST00000384559 107 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 Y_RNA.577-201ENST00000384794 101 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 MIR586-201ENST00000385035 97 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 MRPS18CP6-201ENST00000423587 223 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 AC099677.2-201ENST00000436385 175 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 RNU7-169P-201ENST00000459456 61 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 RNU6-498P-201ENST00000459468 107 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 HMGN2P9-201ENST00000476875 229 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 HMGN1P13-201ENST00000505795 138 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 AC011406.1-201ENST00000512440 370 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.58□□□□□ -2.16
TNFRSF4P43489 AC022868.1-201ENST00000517767 391 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 AC093023.1-201ENST00000547375 507 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 AC090617.3-201ENST00000573670 475 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 AC010999.1-201ENST00000611856 324 ntBASIC1.58□□□□□ -2.16
TNFRSF4P43489 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
TNFRSF4P43489 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.58□□□□□ -2.16
TNFRSF4P43489 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.57□□□□□ -2.16
TNFRSF4P43489 AC073544.1-201ENST00000600110 1595 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 RNU6-490P-201ENST00000362985 107 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 Y_RNA.179-201ENST00000363844 90 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 Y_RNA.187-201ENST00000363918 113 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 RNU6-793P-201ENST00000384233 104 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 RNU6-975P-201ENST00000384296 105 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 MIR520A-201ENST00000384862 85 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
TNFRSF4P43489 SNORA69.1-201ENST00000390904 137 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 RNU1-139P-201ENST00000391307 165 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 RNU2-7P-201ENST00000410794 178 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 AC114482.1-201ENST00000418010 247 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 AC060773.1-201ENST00000421698 310 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.57□□□□□ -2.16
TNFRSF4P43489 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.57□□□□□ -2.16
TNFRSF4P43489 AC016717.1-201ENST00000448918 286 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 RNU7-152P-201ENST00000458982 64 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 AC025465.3-201ENST00000510570 311 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 Y_RNA.661-201ENST00000516003 99 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 RNU6-344P-201ENST00000516635 111 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.57□□□□□ -2.16
TNFRSF4P43489 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.57□□□□□ -2.16
TNFRSF4P43489 AL353149.1-201ENST00000610667 244 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 MIR8074-201ENST00000615081 81 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 AL078596.1-201ENST00000624856 447 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.57□□□□□ -2.16
TNFRSF4P43489 MTND4P29-201ENST00000503122 1372 ntBASIC1.57□□□□□ -2.16
TNFRSF4P43489 AL391987.6-201ENST00000305671 199 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 RNY3P11-201ENST00000364153 102 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 RNU6-1019P-201ENST00000364424 107 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 SNORD87-201ENST00000364849 89 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 RNU6-439P-201ENST00000384188 106 ntBASIC1.56□□□□□ -2.16
TNFRSF4P43489 RNU6-296P-201ENST00000384608 107 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 163 ms