Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Y_RNA.128-201ENST00000363391 112 ntBASIC1.73□□□□□ -2.13
SOX3P41225 Y_RNA.485-201ENST00000384395 102 ntBASIC1.73□□□□□ -2.13
SOX3P41225 RNY3P4-201ENST00000384428 101 ntBASIC1.73□□□□□ -2.13
SOX3P41225 MIR1185-2-201ENST00000408687 86 ntBASIC1.73□□□□□ -2.13
SOX3P41225 SNORD12B-201ENST00000410433 91 ntBASIC1.73□□□□□ -2.13
SOX3P41225 RNA5SP450-201ENST00000411206 102 ntBASIC1.73□□□□□ -2.13
SOX3P41225 ELOCP21-201ENST00000412558 336 ntBASIC1.73□□□□□ -2.13
SOX3P41225 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SOX3P41225 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.73□□□□□ -2.13
SOX3P41225 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.73□□□□□ -2.13
SOX3P41225 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.73□□□□□ -2.13
SOX3P41225 AC007485.1-201ENST00000616755 206 ntBASIC1.73□□□□□ -2.13
SOX3P41225 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.73□□□□□ -2.13
SOX3P41225 snoZ196.1-201ENST00000625269 89 ntBASIC1.73□□□□□ -2.13
SOX3P41225 AC134503.1-201ENST00000633048 54 ntBASIC1.73□□□□□ -2.13
SOX3P41225 AL606534.2-204ENST00000635008 178 ntBASIC1.73□□□□□ -2.13
SOX3P41225 ZNF72P-201ENST00000425869 1908 ntBASIC1.73□□□□□ -2.13
SOX3P41225 Y_RNA.445-201ENST00000384168 102 ntBASIC1.72□□□□□ -2.13
SOX3P41225 MTCO3P19-201ENST00000415864 321 ntBASIC1.72□□□□□ -2.13
SOX3P41225 AC060773.1-201ENST00000421698 310 ntBASIC1.72□□□□□ -2.13
SOX3P41225 MTCO2P12-201ENST00000427426 682 ntBASIC1.72□□□□□ -2.13
SOX3P41225 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.72□□□□□ -2.13
SOX3P41225 snoU13.23-201ENST00000458863 104 ntBASIC1.72□□□□□ -2.13
SOX3P41225 RNU6-221P-201ENST00000459541 99 ntBASIC1.72□□□□□ -2.13
SOX3P41225 Y_RNA.631-201ENST00000459607 101 ntBASIC1.72□□□□□ -2.13
SOX3P41225 RPL23AP63-201ENST00000498752 471 ntBASIC1.72□□□□□ -2.13
SOX3P41225 AC023442.1-201ENST00000531247 422 ntBASIC1.72□□□□□ -2.13
SOX3P41225 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.72□□□□□ -2.13
SOX3P41225 AC006600.1-201ENST00000572529 153 ntBASIC1.72□□□□□ -2.13
SOX3P41225 MIR4287-201ENST00000579398 78 ntBASIC1.72□□□□□ -2.13
SOX3P41225 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.72□□□□□ -2.13
SOX3P41225 AC078899.2-201ENST00000595282 212 ntBASIC1.72□□□□□ -2.13
SOX3P41225 AC012493.3-201ENST00000604494 112 ntBASIC1.72□□□□□ -2.13
SOX3P41225 SNORD58B-201ENST00000607313 66 ntBASIC1.72□□□□□ -2.13
SOX3P41225 AC006157.1-201ENST00000611750 366 ntBASIC1.72□□□□□ -2.13
SOX3P41225 AC099654.10-201ENST00000640395 161 ntBASIC1.72□□□□□ -2.13
SOX3P41225 AL159152.1-201ENST00000635019 2587 ntBASIC1.72□□□□□ -2.13
SOX3P41225 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SOX3P41225 Y_RNA.27-201ENST00000362540 103 ntBASIC1.71□□□□□ -2.14
SOX3P41225 RNU6-708P-201ENST00000384217 107 ntBASIC1.71□□□□□ -2.14
SOX3P41225 MIR597-201ENST00000384968 97 ntBASIC1.71□□□□□ -2.14
SOX3P41225 MIR628-201ENST00000385229 95 ntBASIC1.71□□□□□ -2.14
SOX3P41225 AL160004.2-201ENST00000432935 350 ntBASIC1.71□□□□□ -2.14
SOX3P41225 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.71□□□□□ -2.14
SOX3P41225 MTND2P29-201ENST00000438595 412 ntBASIC1.71□□□□□ -2.14
SOX3P41225 AL353689.1-201ENST00000438895 199 ntBASIC1.71□□□□□ -2.14
SOX3P41225 MTND4P19-201ENST00000446659 478 ntBASIC1.71□□□□□ -2.14
SOX3P41225 UQCRBP2-201ENST00000447827 297 ntBASIC1.71□□□□□ -2.14
SOX3P41225 SNORA40.9-201ENST00000515895 93 ntBASIC1.71□□□□□ -2.14
SOX3P41225 SNORA40.14-201ENST00000516543 86 ntBASIC1.71□□□□□ -2.14
SOX3P41225 AP005660.1-201ENST00000522972 293 ntBASIC1.71□□□□□ -2.14
SOX3P41225 AC018448.1-201ENST00000552843 316 ntBASIC1.71□□□□□ -2.14
SOX3P41225 DEFB122-202ENST00000569013 197 ntBASIC1.71□□□□□ -2.14
SOX3P41225 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.71□□□□□ -2.14
SOX3P41225 MIR4524B-201ENST00000581569 115 ntBASIC1.71□□□□□ -2.14
SOX3P41225 MIR5188-201ENST00000583467 113 ntBASIC1.71□□□□□ -2.14
SOX3P41225 MIR3171-201ENST00000584270 74 ntBASIC1.71□□□□□ -2.14
SOX3P41225 AC005786.1-201ENST00000588553 154 ntBASIC1.71□□□□□ -2.14
SOX3P41225 AL138825.1-201ENST00000618587 192 ntBASIC1.71□□□□□ -2.14
SOX3P41225 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.71□□□□□ -2.14
SOX3P41225 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SOX3P41225 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SOX3P41225 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.7□□□□□ -2.14
SOX3P41225 MIR410-201ENST00000362222 80 ntBASIC1.7□□□□□ -2.14
SOX3P41225 Y_RNA.28-201ENST00000362554 111 ntBASIC1.7□□□□□ -2.14
SOX3P41225 Y_RNA.148-201ENST00000363557 117 ntBASIC1.7□□□□□ -2.14
SOX3P41225 SNORA22B-201ENST00000383876 138 ntBASIC1.7□□□□□ -2.14
SOX3P41225 Y_RNA.498-201ENST00000384460 102 ntBASIC1.7□□□□□ -2.14
SOX3P41225 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
SOX3P41225 SNORA26.9-201ENST00000391322 122 ntBASIC1.7□□□□□ -2.14
SOX3P41225 RNU6-57P-201ENST00000411348 103 ntBASIC1.7□□□□□ -2.14
SOX3P41225 MCFD2P1-201ENST00000417812 300 ntBASIC1.7□□□□□ -2.14
SOX3P41225 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.7□□□□□ -2.14
SOX3P41225 AC108210.2-201ENST00000503681 201 ntBASIC1.7□□□□□ -2.14
SOX3P41225 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.7□□□□□ -2.14
SOX3P41225 RNU6-475P-201ENST00000516073 104 ntBASIC1.7□□□□□ -2.14
SOX3P41225 RNU6-1012P-201ENST00000516606 109 ntBASIC1.7□□□□□ -2.14
SOX3P41225 Y_RNA.711-201ENST00000516993 102 ntBASIC1.7□□□□□ -2.14
SOX3P41225 RNU6-1137P-201ENST00000517073 99 ntBASIC1.7□□□□□ -2.14
SOX3P41225 AC025647.1-201ENST00000517879 253 ntBASIC1.7□□□□□ -2.14
SOX3P41225 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SOX3P41225 AC083806.3-201ENST00000614016 455 ntBASIC1.7□□□□□ -2.14
SOX3P41225 AC022513.1-201ENST00000624512 117 ntBASIC1.7□□□□□ -2.14
SOX3P41225 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.69□□□□□ -2.14
SOX3P41225 RNU6-1264P-201ENST00000383891 107 ntBASIC1.69□□□□□ -2.14
SOX3P41225 RNU6-1227P-201ENST00000383981 107 ntBASIC1.69□□□□□ -2.14
SOX3P41225 MIR9-3-201ENST00000385084 90 ntBASIC1.69□□□□□ -2.14
SOX3P41225 MIR676-201ENST00000390702 67 ntBASIC1.69□□□□□ -2.14
SOX3P41225 MIR1302-11-201ENST00000408051 138 ntBASIC1.69□□□□□ -2.14
SOX3P41225 MIR548P-201ENST00000408336 84 ntBASIC1.69□□□□□ -2.14
SOX3P41225 MIR1302-9-201ENST00000408365 138 ntBASIC1.69□□□□□ -2.14
SOX3P41225 MIR1302-10-201ENST00000408734 138 ntBASIC1.69□□□□□ -2.14
SOX3P41225 CYCSP49-201ENST00000420810 319 ntBASIC1.69□□□□□ -2.14
SOX3P41225 AC096920.1-201ENST00000423991 241 ntBASIC1.69□□□□□ -2.14
SOX3P41225 TOMM22P2-201ENST00000430735 237 ntBASIC1.69□□□□□ -2.14
SOX3P41225 AC011406.1-201ENST00000512440 370 ntBASIC1.69□□□□□ -2.14
SOX3P41225 SNORA25.10-201ENST00000515926 124 ntBASIC1.69□□□□□ -2.14
SOX3P41225 RNU6-107P-201ENST00000516643 102 ntBASIC1.69□□□□□ -2.14
SOX3P41225 RNU6-548P-201ENST00000517083 115 ntBASIC1.69□□□□□ -2.14
SOX3P41225 RN7SKP295-201ENST00000517264 153 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms